LOC113536470


Basic Information

Item Value
gene id LOC113536470
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7415941 ~ 7417038 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403681.2
GAGATCTTTACACTTTGCGGTGTcgcagtaacatgacaagctccagtttttgtcttattacttcaagagagaggaaaagacacGCTGAAACAAATTCATCAAATATGTGGAAAAATTCCAATCTAATCCATGTCAAGACAGTATGTTGCATCAAATGCAGGACTAAGGACCAAAAGAAGAACCTTCTTCTCATCAGTATTTCATCAGGACAGGGATGCTGCAGAATGATGGATTTCTAGGAGACACAGCAGCCCACAGGGCTAGAGCCACCTTCCTCCTGTTCCTGATAAGAGCTGGCATACTGGGCCAAAAGTGCCAGAAGTCCTGCTGCCCTCAAACAACCTAATCTTATCTCAGTCTTACTGCAggtattaaacacacatacgcatACTGTAcgtgtaca

Function

GO: NA

KEGG:

id description
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403681.2 True 403 lncRNA 0.43 4 7415941 7417038

Neighbor

gene id symbol gene type direction distance location
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding downstream 61611 7296707 ~ 7354330 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding downstream 163348 7248348 ~ 7252593 (-)
si:dkey-93h22.8 LOC108270890 coding downstream 213077 7192255 ~ 7202864 (-)
ogal LOC108270888,LOC108412751 coding downstream 225107 7180208 ~ 7190834 (-)
tk1 tk1,LOC107713239,LOC107726782 coding downstream 261232 7150679 ~ 7154709 (-)
irf2bp2b irf2bp2 coding upstream 17281 7434319 ~ 7437490 (-)
rbm34 rbm34 coding upstream 75463 7492501 ~ 7500900 (-)
nid1a nid1 coding upstream 98209 7515247 ~ 7547820 (-)
ero1b ero1b coding upstream 147342 7564380 ~ 7577840 (-)
mctp2b LOC108271124,LOC108428479 coding upstream 177977 7595015 ~ 7623473 (-)
G177491 NA non-coding downstream 1756 7413967 ~ 7414185 (-)
G177469 NA non-coding downstream 40706 7375027 ~ 7375235 (-)
G177459 NA non-coding downstream 122771 7292917 ~ 7293170 (-)
G177455 NA non-coding downstream 125849 7289885 ~ 7290092 (-)
G177448 NA non-coding downstream 144670 7267561 ~ 7271271 (-)
G177539 NA non-coding upstream 5985 7423023 ~ 7423276 (-)
G177547 NA non-coding upstream 23141 7440179 ~ 7440388 (-)
G177550 NA non-coding upstream 24853 7441891 ~ 7442395 (-)
G177559 NA non-coding upstream 53936 7470974 ~ 7471210 (-)
G177562 NA non-coding upstream 62120 7479158 ~ 7479388 (-)
LOC113536608 LOC108270551 other downstream 554593 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1707637 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 2219123 5139610 ~ 5196818 (-)
G176307 NA other downstream 2335046 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2911612 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 63384 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 163396 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 258878 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 827611 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 829665 8246703 ~ 8246775 (-)

Expression


Co-expression Network