Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC113536738 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047605.1 |
| NCBI id | CM018551.1 |
| chromosome length | 26640196 |
| location | 10783125 ~ 10784114 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_003403698.2 | True | 730 | lncRNA | 0.45 | 3 | 10783125 | 10784114 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113536756 | LOC108271257 | coding | upstream | 109073 | 10650258 ~ 10674052 (+) |
| tctex1d2 | tctex1d2 | coding | upstream | 159961 | 10617812 ~ 10623164 (+) |
| rubcn | rubcn | coding | upstream | 203732 | 10565259 ~ 10579393 (+) |
| LOC113536420 | NA | coding | upstream | 219632 | 10555285 ~ 10563493 (+) |
| cx36.7 | LOC108270620 | coding | upstream | 299514 | 10482171 ~ 10483611 (+) |
| LOC113536667 | armc9 | coding | downstream | 329530 | 11113644 ~ 11160226 (+) |
| b3gnt7 | b3gnt7 | coding | downstream | 391983 | 11176097 ~ 11181854 (+) |
| alpi.1 | LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 | coding | downstream | 576850 | 11360964 ~ 11379995 (+) |
| alpi.2 | LOC108270538,LOC108410619 | coding | downstream | 600692 | 11384806 ~ 11392946 (+) |
| ppp1r2 | ppp1r2 | coding | downstream | 611093 | 11395207 ~ 11402964 (+) |
| G179428 | NA | non-coding | upstream | 285413 | 10497488 ~ 10497712 (+) |
| G179427 | NA | non-coding | upstream | 285985 | 10496648 ~ 10497140 (+) |
| G179426 | NA | non-coding | upstream | 290656 | 10492033 ~ 10492469 (+) |
| G179425 | NA | non-coding | upstream | 291352 | 10486697 ~ 10491773 (+) |
| G179212 | NA | non-coding | upstream | 522517 | 10256766 ~ 10260608 (+) |
| G179558 | NA | non-coding | downstream | 20991 | 10805105 ~ 10805311 (+) |
| G179561 | NA | non-coding | downstream | 24922 | 10809036 ~ 10809271 (+) |
| G179572 | NA | non-coding | downstream | 79535 | 10863649 ~ 10863850 (+) |
| G179628 | NA | non-coding | downstream | 285475 | 11069589 ~ 11069817 (+) |
| G179647 | NA | non-coding | downstream | 367904 | 11152018 ~ 11152956 (+) |
| LOC113536578 | NA | other | upstream | 2512375 | 8253421 ~ 8270750 (+) |
| trnar-ucg_8 | NA | other | upstream | 2535037 | 8248016 ~ 8248088 (+) |
| trnar-acg_6 | NA | other | upstream | 2538101 | 8244952 ~ 8245024 (+) |
| trnar-ucg_6 | NA | other | upstream | 2539477 | 8243355 ~ 8243648 (+) |
| rpl37a | rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 | other | upstream | 3511805 | 7267831 ~ 7271320 (+) |
| LOC113536516 | ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 | other | downstream | 26556 | 10810670 ~ 10850923 (+) |
| G179632 | NA | other | downstream | 312039 | 11096153 ~ 11098811 (+) |
| G179643 | NA | other | downstream | 376232 | 11160346 ~ 11161597 (+) |
| G179758 | psmd1 | other | downstream | 644499 | 11428613 ~ 11430897 (+) |
| G180121 | NA | other | downstream | 1270844 | 12054958 ~ 12055749 (+) |
