LOC113536800


Basic Information

Item Value
gene id LOC113536800
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11418114 ~ 11418243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403710.1
ATCTTCTCATGAGCTCCTCTCTGTGTGATGGTGACAGAGCATGGATTCGCACGAGAAGTAGATTGACACTCACATTTATACGAGTCTCTCCTCTATGATGGGAGTTGCTTATGTCTGATGTGAGACAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403710.1 True 130 ncRNA 0.45 1 11418114 11418243

Neighbor

gene id symbol gene type direction distance location
LOC117598448 NA coding upstream 5474 11412574 ~ 11412640 (+)
LOC113536790 NA coding upstream 5987 11412060 ~ 11412127 (+)
ppp1r2 ppp1r2 coding upstream 15150 11395207 ~ 11402964 (+)
alpi.2 LOC108270538,LOC108410619 coding upstream 25168 11384806 ~ 11392946 (+)
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding upstream 38119 11360964 ~ 11379995 (+)
htr2b htr2b coding downstream 28710 11446953 ~ 11457408 (+)
ttc14 ttc14 coding downstream 133283 11551526 ~ 11562360 (+)
dnajc19 dnajc19,LOC107727073 coding downstream 437376 11855619 ~ 11861835 (+)
atp11b atp11b,si:dkey-211e20.10,LOC106613933,LOC107566880,LOC107747927 coding downstream 482153 11900396 ~ 11958703 (+)
kng1 NA coding downstream 567179 11985422 ~ 11992116 (+)
G179753 NA non-coding upstream 10700 11404359 ~ 11407414 (+)
G179754 NA non-coding upstream 16680 11400924 ~ 11401434 (+)
G179696 NA non-coding upstream 222427 11194836 ~ 11195687 (+)
G179685 NA non-coding upstream 254735 11163021 ~ 11163379 (+)
G179648 NA non-coding upstream 263351 11152149 ~ 11154763 (+)
G179773 NA non-coding downstream 53103 11471346 ~ 11473207 (+)
G179775 NA non-coding downstream 55325 11473568 ~ 11475147 (+)
G179779 NA non-coding downstream 60105 11478348 ~ 11530003 (+)
G179786 NA non-coding downstream 98504 11516747 ~ 11518939 (+)
G179787 NA non-coding downstream 103560 11521803 ~ 11524359 (+)
G179643 NA other upstream 256517 11160346 ~ 11161597 (+)
G179632 NA other upstream 319303 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 567191 10810670 ~ 10850923 (+)
LOC113536578 NA other upstream 3147364 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 3170026 8248016 ~ 8248088 (+)
G179758 psmd1 other downstream 10370 11428613 ~ 11430897 (+)
G180121 NA other downstream 636715 12054958 ~ 12055749 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 909809 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 1094645 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 1154914 12573157 ~ 12602064 (+)

Expression


Co-expression Network