LOC117598387


Basic Information

Item Value
gene id LOC117598387
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 16852408 ~ 16857137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579047.1
TATATGcttgtttatttagttttttttttttaattatatttaattgcaACAGTTTATATGAAGGGGTGTTTTTGTGCTCCTTTAGaatagagatgtgtgtgttttcattctgCTTCCTGGGTGGATGACCCTCAGAGTGGAGAGCTGCTGTCAGAGAGGTGGAACCCCACACAAAACATCAGATATGACCTGGTCTCCAGGACAACTGATGACCAGAGAAGAATGATGGGATGTTGTGCTGCAAGTCCAATTTTGTTTTGCTATGAAGTTATTTTTTTCGAAGCATTTCATGATGACACACTGTCTGTACTAAACGAATGAACATGTCCTTTACAATCAGGCAAAGGCACCTACCTTCAAGGTACCTTTCTCCAAAGCCTTTTCCTCTGAACATATGCACTCATACCATATCATATTTTAGGAGCAGGATACAGAATGTGCTGGCCtttatgtgtgttttggttGATTTGATAGTTACATTAACTTTGGCAAGGCTCAAAAATAATGCCTGAGAGCAATTTTGATAAAACCTAAAAAAGATTCATGCTTGCTGATCACTGTagcagatttttatttacatatccATACATGCAAATTGACAGTAAGATAGTGTGTTATTAAGCTTAagttacacaaacacagggtctcagggagcctggagcctttcccaggggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579047.1 True 675 lncRNA 0.39 3 16852408 16857137

Neighbor

gene id symbol gene type direction distance location
ap3d1 ap3d1,LOC107593327,LOC107676965,LOC107586409 coding upstream 5204 16814608 ~ 16847204 (+)
hdgfl2 hdgfrp2,LOC108270897,LOC108430101,LOC107676974,LOC107717991 coding upstream 38162 16801804 ~ 16814246 (+)
chaf1a chaf1a coding upstream 66209 16774458 ~ 16786199 (+)
unc13a LOC108270949,LOC108430111 coding upstream 202293 16606126 ~ 16650115 (+)
hmg20b hmg20b,LOC107586380,LOC107719660,LOC107655186,LOC107729671 coding upstream 249646 16597960 ~ 16602762 (+)
LOC113532286 LOC108270593,LOC108430073,LOC107719667,LOC100332608,LOC107699403,LOC107593325,LOC107676991,LOC107586464 coding downstream 1790 16858927 ~ 16862149 (+)
LOC113527868 LOC108271202,LOC108430096,LOC105011594,LOC107717982,LOC107699416,LOC106584406,LOC106613802,LOC107586405 coding downstream 55435 16912572 ~ 16947458 (+)
tle5 aes,LOC108271216,LOC108430095,LOC107593322,LOC107586404 coding downstream 92611 16949748 ~ 16975577 (+)
tle2b LOC108271164,LOC108430094,LOC107676970,LOC107719559 coding downstream 142968 17000105 ~ 17066956 (+)
trnak-cuu_26 NA coding downstream 172735 17029872 ~ 17029944 (+)
LOC117598408 zbtb7a,LOC108270628 non-coding upstream 126881 16708625 ~ 16725527 (+)
G182483 NA non-coding upstream 592092 16260058 ~ 16260316 (+)
G182190 NA non-coding upstream 843173 16006054 ~ 16009235 (+)
G182116 NA non-coding upstream 861998 15988630 ~ 15990410 (+)
G182115 NA non-coding upstream 864427 15938100 ~ 15987981 (+)
G182906 NA non-coding downstream 103522 16960659 ~ 16961299 (+)
G182910 NA non-coding downstream 132182 16989319 ~ 16989519 (+)
G182932 NA non-coding downstream 222500 17079637 ~ 17083529 (+)
LOC113535983 NA non-coding downstream 559593 17416730 ~ 17423320 (+)
G183032 NA non-coding downstream 593320 17450457 ~ 17450736 (+)
G182819 NA other upstream 267465 16583303 ~ 16584943 (+)
LOC113532318 NA other upstream 595626 16255047 ~ 16256782 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 1178426 15668798 ~ 15673982 (+)
pdzk1ip1 NA other upstream 2140681 14708927 ~ 14711727 (+)
si:dkey-121a11.3 LOC108270690,LOC107588106,LOC107592730 other upstream 2202723 14622543 ~ 14649685 (+)
G182877 NA other downstream 56121 16913258 ~ 16922922 (+)
si:ch211-126j24.1 LOC108270963,LOC108411470,LOC107550685,LOC107588448,LOC107697062 other downstream 264762 17121899 ~ 17189315 (+)
LOC113528769 klc4 other downstream 339143 17196280 ~ 17222532 (+)
kcnh1b kcnh1b,LOC108270513,LOC108411957,LOC107689936,LOC107753489,LOC107570545,LOC105026838,LOC103369331,LOC106564801 other downstream 508561 17365698 ~ 17411425 (+)
LOC113536271 ankub1 other downstream 582659 17439796 ~ 17446248 (+)

Expression


Co-expression Network