LOC117598391


Basic Information

Item Value
gene id LOC117598391
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6094203 ~ 6100027 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579052.1
tttgtgCAGGCAGttagtttgttttattgtaaataaaaaagcctgacaGAGACACGTCACTGCTAAATAGCCATTCAGTTTCAACTAATTTATCCTCAGCTCCAGATGTTGCATGTATTGATTCCGCCATGTTTTCTTCCTGACACGCCAACAGCTCAGAGCTCAAAAACAAACTCCCGAGTTTCCCACtcgtaattacgactttgtGGTGGCGTGTCAACTCGTAAACACGATCTTTCCGACGTGACTTGAAGGCAGTATCAGAAATACATCACGTGTTCACGCTTTTTGTGCTTCAGTAGACAGAGTGTAACTGCACACAGACATGTTACTGTATAACACACTCAGCTGTAGGCTACCTAAAGCTACCCCACAGGACAGGTGTCGTTTATGTGGTACGTACCGGAAGGCTTCTGGAACCTTCTTCTTTCGGGGCAGTGCAGAGTTGTAGACTCCATCAGCAGCTGACGGCACCGACCTCTGCCTCGTCCTGATCTGGGAccagatttgtgtttttttcactcCATGGACAGGTCCTGGATCAGTAGAAAACTGCAAGCTCTCGTTCTCTCTTGTCCCATGATAAGCCTCTGTCCTAATCTCGGCACTGTCAGCTAAGAGGATTGCAACCGTCCTGTATGCAGATTTGCAGCAGGAGAGCAtgctgggagaaaaaaaaaaagagaagaagattGCATGTATGTTTCCACTGTTGTAATGGTGACTGCACTGGTGATGCTCTATGCATTAGAGGCTTCTCATAAGAAAACAATGCCTAGAGCATTGGTACGAGGCAGGTTAGCTGTACCATGGCAACAGAGCAAAGCATGCTCATGATTGGTGGACTTTTCATAAACTGAAAGATGATCCGAAAGAGATCTGGGCCCAGTTTCCTAAAAgcatcataaaattaaaatcatccTAGctggtagagagagacagagggagagtgaTCCATGTGAAGATACCATTTTAGCAATGAGCTTAGTGCTGTGATGCTTTTAGCAAAGAGATAGACAACATACGTGAAAGGATTTGACCAGAACTGCACCTCGCTCTAATTTGCACTTGAAGCAACAGCATTAGTCACATGCTTTGCTGTAATCTGTAATCGGATAGAAAGGAAAGGATACGCCTCATGCTATAGCATTTTCATTAGACCTtgtatgtgtggcagcctgggaaaccCACATGgtcacattttgacattttgacatgTTTAACTAAACTGatatatgtttctcttttgcatgtttcTCAACCACGAGTAAAGCATTTTATAATCTGATTATATCCTATTCCCCTTAAAAAGCCGTCTCACCTACACCTACCTCACtgccattttaaattttaaagaatttccgatgagaaatgagttctcactttgattatcagtatcatccacatcagtctctgtctcgcattcaaacacaagcctcatcatCTCTTCACTCGACTGTTCACGCTAACATCAGTGAGCAAATAACTGCTCATTCATTCTTGTTATTCGGtcatttaagtattttaaaattatctGTACAGAGTAtgtaagcgctcttctctgttttgatgatgtgtcAATTTTAGGAGTCAATATCTAATCACAACATGAATTGTTCAGCCTCATGTCCATTTCACTATGACATGTAACTATATAAAATCTTTATcgtagcaaggttttagacatcttttgGTAGACCAactgtgtttactgctgtgtttgttaaattagcGTCATCACGAATTCCACCTCTTCCCAGTGCTGCGAGTGCTGCTTGTGTGTCGTGTTTTGATCGTAGTTCTCTGTGTGCTTTTGTTActgttttggttttcttttctctatatCATGTGTGtcttgttattatttaatcacactgtatatatattttcagtttaCAATCATGTTCATGCATTTGTATCCAGTTTTCTCATACTTCCTTGAcaccaaggcaaggttagaaagtagtGCAAGTAAAACATTATCATGTTATTATCAAGTAGAGCTGTCACTGTATACTTTTTGGCATTTtgtgaccttttttttgtaatttttggctGTTTACTACAATTCAGGCATGGTGACatccgatgggttttcccaAACCACCACATATACTGTAAAGCATGATTATTATATTAGTGTGTATGACTTTGAACAAGATGTGTACATGTGCTGCTTCATTCAGTTTTACcatcaaaatgaaatgaaagcatcGTTGATTAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579052.1 True 2227 lncRNA 0.40 3 6094203 6100027

Neighbor

gene id symbol gene type direction distance location
tdrd3 tdrd3,LOC107557396 coding upstream 205360 5867064 ~ 5888843 (+)
zgc:194981 NA coding upstream 228243 5861430 ~ 5865960 (+)
sirt7 sirt7 coding upstream 240377 5845459 ~ 5853826 (+)
ankrd13c ankrd13c,LOC102791519,LOC106573859 coding upstream 265807 5788447 ~ 5828396 (+)
rfc4 rfc4 coding upstream 321287 5763807 ~ 5772916 (+)
foxg1b LOC108270571 coding downstream 17248 6117275 ~ 6119629 (+)
LOC113536615 LOC108271104 coding downstream 67451 6167478 ~ 6174101 (+)
LOC113536616 LOC108271104 coding downstream 78405 6178432 ~ 6182676 (+)
LOC113536774 LOC108271104 coding downstream 87927 6187954 ~ 6191988 (+)
vipb LOC108270647 coding downstream 101822 6201849 ~ 6205705 (+)
G176746 NA non-coding upstream 18776 6070947 ~ 6075427 (+)
G176700 NA non-coding upstream 142048 5951814 ~ 5952155 (+)
G176608 NA non-coding upstream 236961 5855525 ~ 5857242 (+)
G176596 NA non-coding upstream 279097 5814595 ~ 5815106 (+)
G176469 NA non-coding upstream 403343 5677206 ~ 5690860 (+)
G176964 NA non-coding downstream 454567 6554594 ~ 6555007 (+)
G177159 NA non-coding downstream 759277 6859304 ~ 6860230 (+)
LOC113536609 NA non-coding downstream 763798 6863825 ~ 6875047 (+)
G177165 NA non-coding downstream 785551 6885578 ~ 6886403 (+)
G177141 NA non-coding downstream 804942 6904969 ~ 6907752 (+)
G175977 pacsin3 other upstream 1433067 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 1449005 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1794836 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 2435913 3647355 ~ 3658290 (+)
pth1b NA other upstream 2447088 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1022358 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1167804 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2143328 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2144925 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2147989 8248016 ~ 8248088 (+)

Expression


Co-expression Network