LOC117598394


Basic Information

Item Value
gene id LOC117598394
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 26429135 ~ 26436719 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579055.1
aagctgctctctgatctactgaaggatccacactgtaaactagagacactacaCATTGAGTCATACTTCCCCACTAGGATGGGCATATAACAGGAGTCTCACTTCAGACCACTTTTGGAGGATAAAGCAGCTACATGTAAGATATTAGGTGAATGAAGGAAACTGTTATTTCTCTCGTTGTGTTGTTTACCATCCATGAAACGGGACTTGTGAGTCAGTGCATAGTCATCAGCTCAAACTGCACGGTTGGCGTGTTATGGTCAGGCAGAAAGGTAGCAATTTGTTCAGGAAGAATAGTTTTTAATTGCTCTATCAGCGTTAGTTTAAACAGGTGATTGTAAGACTCCACTTTCACTGAGGCACACCAGCGGaatgatgaagagaaagagatcagactcaccagaacccagctgtgtgtccatgaagagtgacgcgTCAATGGATCCACCAATActcttcagagacagagacagttctactgatgtgagatcacaaaagaagaaatcaaacatcaacagaagtcagttggagtccatattcacgg
>XR_004579056.1
aagctgctctctgatctactgaaggatccacactgtaaactagagacactacaCATTGAGTCATACTTCCCCACTAGGATGGGCATATAACAGGAGTCTCACTTCAGACCACTTTTGGAGGATAAAGCAGCTACATGTAAGATATTAGAAGGAGAAGACCGTTAGACGGAAGTGAAACTCAGCAGCTCCATTTTGTGTCGACGGGAAAAGAAACCActtcaggagtaaaaacacaaatgatgaagagaaagagatcagactcaccagaacccagctgtgtgtccatgaagagtgacgcgTCAATGGATCCACCAATActcttcagagacagagacagttctactgatgtgagatcacaaaagaagaaatcaaacatcaacagaagtcagttggagtccatattcacgg
>XR_004579057.1
aagctgctctctgatctactgaaggatccacactgtaaactagagacactacaCATTGAGTCATACTTCCCCACTAGGATGGGCATATAACAGGAGTCTCACTTCAGACCACTTTTGGAGGATAAAGCAGCTACATaatgatgaagagaaagagatcagactcaccagaacccagctgtgtgtccatgaagagtgacgcgTCAATGGATCCACCAATActcttcagagacagagacagttctactgatgtgagatcacaaaagaagaaatcaaacatcaacagaagtcagttggagtccatattcacgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579055.1 True 544 lncRNA 0.43 4 26429135 26436719
XR_004579056.1 False 408 lncRNA 0.43 5 26429135 26436719
XR_004579057.1 False 309 lncRNA 0.44 4 26429135 26436719

Neighbor

gene id symbol gene type direction distance location
LOC113524564 LOC108261406,LOC108270747,LOC108273692,LOC108273544,LOC108270753,LOC108273546,LOC108261257 coding upstream 34 26421913 ~ 26429101 (+)
LOC117598406 sdhaf2,LOC107685224 coding upstream 184415 26241072 ~ 26244720 (+)
LOC113524556 sdhaf2,LOC107685224 coding upstream 201219 26223817 ~ 26227916 (+)
helz2a helz2 coding upstream 290516 26099524 ~ 26138619 (+)
slc38a7 slc38a7,LOC107596458,LOC107683258 coding upstream 333997 26083657 ~ 26095138 (+)
LOC117598404 LOC107716903 coding downstream 54398 26491117 ~ 26491773 (+)
rplp2l rplp2,LOC108260028,LOC103139322,LOC107381616,LOC105916325,LOC101168608,LOC108250873 coding downstream 77831 26514550 ~ 26517299 (+)
LOC117598415 rplp2,LOC108260028,LOC103139322,LOC101168608 coding downstream 127582 26564301 ~ 26566306 (+)
LOC117598395 NA non-coding upstream 7636 26420374 ~ 26421499 (+)
LOC117598393 NA non-coding upstream 8762 26419606 ~ 26420373 (+)
G188202 NA non-coding upstream 206214 26218931 ~ 26222921 (+)
G188179 LOC108270676,LOC108439640 non-coding upstream 262343 26153529 ~ 26166792 (+)
LOC117598392 LOC108270747,LOC108273219,LOC108273545,LOC108261282,LOC108273546,LOC108274210,LOC108261633,LOC108263642,LOC108268260,LOC108273691 non-coding downstream 9260 26445979 ~ 26511407 (+)
G188396 NA non-coding downstream 84694 26521413 ~ 26574817 (+)
LOC117598444 NA non-coding downstream 124072 26560791 ~ 26561738 (+)
syt7b syt7,LOC108271440,LOC103462425,LOC101476086,LOC103139426,LOC102796193,LOC100697404,LOC108250198,LOC102203020 other upstream 77100 26260530 ~ 26352035 (+)
polr2l polr2l other upstream 217020 26185862 ~ 26212115 (+)
G188164 NA other upstream 219125 26206942 ~ 26210010 (+)
LOC113523924 nell1 other upstream 732263 25531745 ~ 25696872 (+)
oaz1a oaz1 other upstream 1860492 24563400 ~ 24568643 (+)

Expression


Co-expression Network