LOC117598401


Basic Information

Item Value
gene id LOC117598401
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 12032000 ~ 12037456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579069.1
CCTGAAGGACCCGGGATTTTTATTCCGGCAATTTCTCCGGACACCTAAACTGCGCTCCAGTACTGTCTTCCAATAGTGTTTACACAACctcgtgctgttacaggaaaataatcccaCAGTGGGGTGGTATGATGAAGCACAACTCtaagttttttcttcttcttcttatatcACAGGGTGAAGTTTCCTTTAAAATGGGGCCAGGAATCAACTAAGAGGAAAtaataagggggaaaaaagtccaAATGGGGGCTTGAACTCTGCTGGAACACAGGTTTGGCCATCAAATATGAGCTTTTCTTTATGTTCTACCAGCTTTCACCACCAGAGGGAAATGACATCAAACCTGGGTCGGTTGACGGAGCCATGTGCACAGAGTGTGTCCTGCTTCCTGACTACTCTTTCACATCTATTTCCTCTGTGCACAGAACAACATGCTGTCCATTAGCACAGGAGATCAGTTTCATCACATCAGGTTTAGAAATCTCCAGAATGTCAGCATAAGAGGGCTCGCTGATGGCCTCCTGACTTCCCTGTCTTACAGAGATGAATAGGAGTGCAGGAACATTACCTAAgGCATCACAGCAGCTCCTTTACTCCTCTTAAAACATGGTCTGCAAagcggggtgtgtgtgtgtgcatgtgtgtgtgatgcatgtGGACGGATTGGCTGCCTGCCAAAATGATCTCCAGCAGTAGCCCTGTGTTTCCCGGAGAGGTTCTGGATTTACTGCGGCCCTGGACTGGAAAAGGGTTTACGGAAAGAGAATGAATGATTCATCTGCTTCTGGGCAAACAGCTGCTGTTTACGTATCACATGTTAAGACACAGAGCTCATCTTTTATCCATAAACATTATCCTTGGAGTTaatttgctattattattggatttgtttacaatttttatctACACAGAGAACTGGATTGAGATGGATGTGGGGTGATTCTCATGTCATAAAGTCAGAACAGTTAACTTGTAGACGCCGAGTGATACGCTTCTTGGTGCTCCAATTCCAAGTCGTAATCCCAGCCAACAATTTTAGGtaaccaaatttttttttcagtttaaagaatgtttgtaaatgttcaTACAATGTGTGATTTGGAGCATTTTGTGAGCAaccatttaataacattttactgtattaatttttttaccaTCACTATTATTTATGTCTGAAccataattagtttttttttattattattctatattgttgttttattgCACAACAAATACTCTACAGTCTTGCACAACAAATACCCTACACAAATCTATACAGTTATATTCATGACAACTTTCTAATGTTGtcaaggttttttctttttttaacattgttgTTGAATTTGTCATTGTACTGTCAtagtattgattaattttctataacagcaggtctggcAGTAGTGTAGCTACAAatcacgtttatattaatgtactcgttCTTGtatgttaccgtttctataataacagctcattcccaGATACATGTATGGCAGAtgcgccacataaacagattacagaaattgtgtgtaattggtgatttggtgaagttttctgtgaggagactttTACTTAAcgcttatggaaggagtctacagtgtcagtgctttggaacagtcagaggtaaagctataactttaagttttccaaaatCGTCAGGACACAGAAGTTTATGCTTTGccgtttctctgtaacatgacaagctgaatttttttgtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579069.1 True 1718 lncRNA 0.39 4 12032000 12037456

Neighbor

gene id symbol gene type direction distance location
cers1 cers1,LOC107718480 coding upstream 12500 11996456 ~ 12019500 (+)
kng1 NA coding upstream 39884 11985422 ~ 11992116 (+)
atp11b atp11b,si:dkey-211e20.10,LOC106613933,LOC107566880,LOC107747927 coding upstream 73297 11900396 ~ 11958703 (+)
dnajc19 dnajc19,LOC107727073 coding upstream 170165 11855619 ~ 11861835 (+)
ttc14 ttc14 coding upstream 469640 11551526 ~ 11562360 (+)
LOC113536486 myo9b coding downstream 35788 12073244 ~ 12135868 (+)
use1 use1,LOC107756022 coding downstream 102137 12139593 ~ 12147859 (+)
insrb insr,LOC108271075 coding downstream 116812 12154268 ~ 12233819 (+)
arhgef18b arhgef18 coding downstream 201776 12239232 ~ 12300910 (+)
sass6 sass6,LOC107756018 coding downstream 318539 12355995 ~ 12369777 (+)
LOC117598421 NA non-coding upstream 203462 11826929 ~ 11828538 (+)
G179858 NA non-coding upstream 332025 11699682 ~ 11699975 (+)
G179834 NA non-coding upstream 464433 11567358 ~ 11567567 (+)
G179779 NA non-coding upstream 501997 11478348 ~ 11530003 (+)
LOC113536506 NA non-coding downstream 8348 12045804 ~ 12053150 (+)
G180122 NA non-coding downstream 15816 12053272 ~ 12053612 (+)
G180132 NA non-coding downstream 25103 12062559 ~ 12062910 (+)
G180144 NA non-coding downstream 143559 12181015 ~ 12186970 (+)
G180192 NA non-coding downstream 355431 12392887 ~ 12393491 (+)
G179758 psmd1 other upstream 601103 11428613 ~ 11430897 (+)
G179643 NA other upstream 870403 11160346 ~ 11161597 (+)
G179632 NA other upstream 933189 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 1181077 10810670 ~ 10850923 (+)
LOC113536578 NA other upstream 3761250 8253421 ~ 8270750 (+)
G180121 NA other downstream 17502 12054958 ~ 12055749 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 290596 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 475432 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 535701 12573157 ~ 12602064 (+)
ankmy1 ankmy1 other downstream 1058917 13096373 ~ 13111706 (+)

Expression


Co-expression Network