LOC117598441


Basic Information

Item Value
gene id LOC117598441
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 7156228 ~ 7157621 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579109.1
GCGCGCGCAGGTCACGGCACCTTGCCTGCACGCTCACGTGACACGTCACTGCTTCTGCCTGCGCGTGAATGCCTGTGCGCGCGCAGGTCACGGCCCCTTGTCTACACGCTCATTTGACACGTCACTTTTTGAACGCGGAACGAATTTAAAGTGTTgggaaaaaaactgcagctagTTTCAGTGAGACTTTGGTGCAATGTTTGGATAGCTCTTTTACAGCCTTAACTGTAGACCTTTGAGCCTTCCTGACATGAATGAAGAAGTCACAGAGCCAATGAAAAGCTTTGTTTCTCCACACAGGCTAAAACAAAGTTAAACATAAGCTTCAtgggtTAGCACCCTTTCCATGGTGTCctccaccttgtgccctgagtcccctgggataggttccaggctccccgcgaccctgtgtaggataagtggtacagaaaatggatggatggattaaacATCTTTTGCCCAGTGTATTAtactctgtgattttttttgtactatataaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579109.1 True 504 lncRNA 0.47 3 7156228 7157621

Neighbor

gene id symbol gene type direction distance location
tk1 tk1,LOC107713239,LOC107726782 coding downstream 1519 7150679 ~ 7154709 (-)
tmc6b tmc6 coding downstream 48019 7079500 ~ 7108209 (-)
aspscr1 aspscr1 coding downstream 100304 7018805 ~ 7055924 (-)
LOC113536680 LOC108270653 coding downstream 144713 7009298 ~ 7011515 (-)
pycr1b pycr1,pycr1b,LOC107572052,LOC107564555,LOC108443889,LOC108236293 coding downstream 160660 6988303 ~ 6995568 (-)
ogal LOC108270888,LOC108412751 coding upstream 22587 7180208 ~ 7190834 (-)
si:dkey-93h22.8 LOC108270890 coding upstream 34634 7192255 ~ 7202864 (-)
cfap410 c10h21orf2,cunh21orf2,LOC107713232,LOC107564578 coding upstream 90727 7248348 ~ 7252593 (-)
strn strn,LOC108271087,LOC108430145,LOC107702041,LOC107701064 coding upstream 139086 7296707 ~ 7354330 (-)
irf2bp2b irf2bp2 coding upstream 276698 7434319 ~ 7437490 (-)
G177404 NA non-coding downstream 17324 7137629 ~ 7138904 (-)
G177374 notum non-coding downstream 96678 7058532 ~ 7059550 (-)
G177097 NA non-coding downstream 417620 6738321 ~ 6738608 (-)
LOC117598400 NA non-coding downstream 566932 6579004 ~ 6589296 (-)
G176991 eif4g2,LOC108433007,LOC101472382,LOC103379577,LOC100694876,LOC102291832,LOC102792130 non-coding downstream 604646 6551325 ~ 6551582 (-)
G177448 NA non-coding upstream 109940 7267561 ~ 7271271 (-)
G177455 NA non-coding upstream 132264 7289885 ~ 7290092 (-)
G177459 NA non-coding upstream 135296 7292917 ~ 7293170 (-)
G177469 NA non-coding upstream 217406 7375027 ~ 7375235 (-)
G177491 NA non-coding upstream 256346 7413967 ~ 7414185 (-)
LOC113536608 LOC108270551 other downstream 294880 6856755 ~ 6861348 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 1447924 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 1959410 5139610 ~ 5196818 (-)
G176307 NA other downstream 2075333 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 2651899 4498946 ~ 4504329 (-)
si:dkey-56d12.4 LOC108270721 other upstream 322801 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 422813 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 518295 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 1087028 8244649 ~ 8244721 (-)
trnar-acg_7 NA other upstream 1089082 8246703 ~ 8246775 (-)

Expression


Co-expression Network