LOC117598448


Basic Information

Item Value
gene id LOC117598448
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 11412574 ~ 11412640 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579127.1
TGCACAGATGATGACTCTCAAGGGACTTAATACTGACActtgatgattttattttgatctGATGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579127.1 True 67 ncRNA 0.37 1 11412574 11412640

Neighbor

gene id symbol gene type direction distance location
LOC113536790 NA coding upstream 447 11412060 ~ 11412127 (+)
ppp1r2 ppp1r2 coding upstream 9610 11395207 ~ 11402964 (+)
alpi.2 LOC108270538,LOC108410619 coding upstream 19628 11384806 ~ 11392946 (+)
alpi.1 LOC108270517,LOC108410621,LOC105900923,LOC107698042,LOC107550664 coding upstream 32579 11360964 ~ 11379995 (+)
b3gnt7 b3gnt7 coding upstream 230720 11176097 ~ 11181854 (+)
LOC113536800 NA coding downstream 5474 11418114 ~ 11418243 (+)
htr2b htr2b coding downstream 34313 11446953 ~ 11457408 (+)
ttc14 ttc14 coding downstream 138886 11551526 ~ 11562360 (+)
dnajc19 dnajc19,LOC107727073 coding downstream 442979 11855619 ~ 11861835 (+)
atp11b atp11b,si:dkey-211e20.10,LOC106613933,LOC107566880,LOC107747927 coding downstream 487756 11900396 ~ 11958703 (+)
G179753 NA non-coding upstream 5160 11404359 ~ 11407414 (+)
G179754 NA non-coding upstream 11140 11400924 ~ 11401434 (+)
G179696 NA non-coding upstream 216887 11194836 ~ 11195687 (+)
G179685 NA non-coding upstream 249195 11163021 ~ 11163379 (+)
G179648 NA non-coding upstream 257811 11152149 ~ 11154763 (+)
G179773 NA non-coding downstream 58706 11471346 ~ 11473207 (+)
G179775 NA non-coding downstream 60928 11473568 ~ 11475147 (+)
G179779 NA non-coding downstream 65708 11478348 ~ 11530003 (+)
G179786 NA non-coding downstream 104107 11516747 ~ 11518939 (+)
G179787 NA non-coding downstream 109163 11521803 ~ 11524359 (+)
G179643 NA other upstream 250977 11160346 ~ 11161597 (+)
G179632 NA other upstream 313763 11096153 ~ 11098811 (+)
LOC113536516 ephb3,LOC107687281,LOC107668659,LOC102790569,LOC107744192 other upstream 561651 10810670 ~ 10850923 (+)
LOC113536578 NA other upstream 3141824 8253421 ~ 8270750 (+)
trnar-ucg_8 NA other upstream 3164486 8248016 ~ 8248088 (+)
G179758 psmd1 other downstream 15973 11428613 ~ 11430897 (+)
G180121 NA other downstream 642318 12054958 ~ 12055749 (+)
timm13 timm13,LOC107731338,LOC106573564,LOC107593051 other downstream 915412 12328052 ~ 12333681 (+)
cdc14ab cdc14a other downstream 1100248 12512888 ~ 12561781 (+)
LOC117598398 NA other downstream 1160517 12573157 ~ 12602064 (+)

Expression


Co-expression Network