trnap-agg_1


Basic Information

Item Value
gene id trnap-agg_1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 21958888 ~ 21958959 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg_1
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAAGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg_1 True 72 tRNA 0.61 1 21958888 21958959

Neighbor

gene id symbol gene type direction distance location
lims1 lims1,LOC107687747,LOC107715819,LOC107572539,LOC104918652,LOC108270729 coding upstream 188802 21756590 ~ 21770086 (+)
nxph2b LOC108270824 coding upstream 336611 21616189 ~ 21622277 (+)
si:ch211-227n13.3 LOC108270813 coding upstream 343596 21611776 ~ 21615292 (+)
slc4a10a LOC108270744,LOC108412979,LOC107674536 coding upstream 352974 21561055 ~ 21605914 (+)
tbr1a LOC108270775 coding upstream 399886 21554701 ~ 21559002 (+)
fam43a fam43a,LOC106573864 coding downstream 1174008 23132967 ~ 23135152 (+)
LOC117598438 NA coding downstream 1210924 23169883 ~ 23170911 (+)
ddx59 ddx59,LOC107717990,LOC107593348 coding downstream 1419722 23378681 ~ 23387676 (+)
kif14 kif14 coding downstream 1430111 23389070 ~ 23410114 (+)
LOC113526144 LOC108270555 coding downstream 1454070 23413029 ~ 23473569 (+)
G185751 NA non-coding upstream 398509 21560167 ~ 21560379 (+)
G185546 NA non-coding upstream 470361 21488324 ~ 21488527 (+)
G185533 NA non-coding upstream 491950 21466332 ~ 21466938 (+)
G185519 NA non-coding upstream 512408 21444384 ~ 21446480 (+)
G185503 NA non-coding upstream 549096 21407479 ~ 21409792 (+)
G185940 NA non-coding downstream 61889 22020848 ~ 22021059 (+)
G185997 NA non-coding downstream 422439 22381398 ~ 22381611 (+)
G186046 NA non-coding downstream 469899 22428858 ~ 22429104 (+)
G186060 NA non-coding downstream 596490 22555449 ~ 22899731 (+)
G186058 NA non-coding downstream 931325 22890284 ~ 22942348 (+)
si:dkey-28e7.3 LOC108270845,LOC108438669,LOC107718874,LOC107753848,LOC107674537,LOC107680538 other upstream 693833 21252145 ~ 21265055 (+)
wipf2a LOC108270800 other upstream 748349 21189248 ~ 21210539 (+)
G184979 NA other upstream 1807994 20149971 ~ 20150894 (+)
ccl44 LOC108271213 other upstream 2087425 19865798 ~ 19871463 (+)
LOC113534304 slc1a6,LOC108270573,LOC108437295,LOC107685347,LOC108271210,LOC105901002,LOC107747749,LOC107757933 other upstream 2113650 19836145 ~ 19845238 (+)
pcdh17 pcdh17,LOC107687749,LOC107572292,LOC107718221,LOC107739552 other downstream 353483 22312442 ~ 22381020 (+)
glrx2 glrx2 other downstream 2248917 24207876 ~ 24210763 (+)
oaz1a oaz1 other downstream 2604441 24563400 ~ 24568643 (+)
LOC113523924 nell1 other downstream 3572786 25531745 ~ 25696872 (+)
polr2l polr2l other downstream 4226903 26185862 ~ 26212115 (+)

Expression


Co-expression Network