G188605


Basic Information

Item Value
gene id G188605
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 509030 ~ 511976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223261
CAGAAGTTataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatacacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatacacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatacacgtggatacagaagtcataatcgcgttataaacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatac
>TU223262
TataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatacacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgCGTTATACacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatacacgtggatacagaagtcataatcgcgttatATACCATCAGAACATGTTCGTGCTGATGAGGAAAGCTAACGAGCGCGTAGTTCAGGCTTTACTCAATCTGCCGTTAGTCATAAAGGCTGCTATCACTAACCCAAATAATCACTTTTACCAACTCTCAAACA
>TU223264
TataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatacacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgCGTTATACacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223261 True 663 lncRNA 0.36 2 509420 510163
TU223262 False 529 lncRNA 0.38 3 509030 511976
TU223264 False 391 lncRNA 0.37 2 509030 511049

Neighbor

gene id symbol gene type direction distance location
LOC117598554 NA coding upstream 233584 274381 ~ 275446 (+)
si:ch211-207i20.2 LOC108274000 coding upstream 357576 139859 ~ 151454 (+)
LOC113535195 LOC108273631 coding upstream 372242 134237 ~ 136788 (+)
LOC113535310 NA coding upstream 383191 121267 ~ 125839 (+)
LOC113536986 LOC108273772,LOC108273771 coding upstream 403110 83710 ~ 105920 (+)
btbd16 btbd16 coding downstream 209075 721051 ~ 753040 (+)
htra1b htra1,LOC107660481 coding downstream 282462 794438 ~ 823982 (+)
zgc:174164 NA coding downstream 324075 836051 ~ 856083 (+)
get4 get4,LOC104959995,LOC103374619 coding downstream 346092 858068 ~ 867809 (+)
LOC113535268 NA coding downstream 377200 889176 ~ 920532 (+)
LOC113535322 NA non-coding upstream 254282 243923 ~ 254748 (+)
G188466 NA non-coding upstream 326155 157512 ~ 182875 (+)
LOC113537089 NA non-coding upstream 500515 8047 ~ 8515 (+)
G188681 NA non-coding downstream 122424 634400 ~ 634983 (+)
G188694 NA non-coding downstream 180983 692959 ~ 694469 (+)
G188715 NA non-coding downstream 228450 740426 ~ 741752 (+)
G188730 NA non-coding downstream 322127 834103 ~ 834569 (+)
G188744 NA non-coding downstream 393490 905466 ~ 913373 (+)
ccser2b ccser2 other upstream 286611 137521 ~ 222419 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 213057 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 445556 957532 ~ 974218 (+)
LOC117598477 NA other downstream 1055540 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1425711 1937687 ~ 1952224 (+)
pyyb NA other downstream 2013080 2525056 ~ 2528820 (+)

Expression


Co-expression Network