G188694


Basic Information

Item Value
gene id G188694
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 692959 ~ 694469 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223359
ACAACTTTTTATTCAAGTTAAAATTATATACAAGTAATCAAAggcattatttttgaaattggTACAAAGTGTCCAGGATCCTGCAGTTGGCTTTTGGACGCAGCTTAAATTTGACCTCAAcaaaactgagagagaaaaaaaaaaaataaggttcGATTTTGAAAAGTAGTCTATCATTCTAGATTTCCAAGAGccaatatttacagaaatatgtacATCTGTGTGGTTCCATTCATTTCCATAGTTAAGAGAACGGCGATGGTTAGCGCACTGAACAGCCCTAACagagcgaacacacacacacacacacacacacacacaccactgtttcTGCAGGGAGACAAACGACCAACAAAAAGGTTTGCAGCAggcaacaaaaagaaaacacacactttgatAATACGCATCAAttgaaagtaaataataataattataataataataaaaacacctTGTATGTCTTTTTCTGTACATCTGGATGATGAATTCATTTCCAATTTCATCGAGAGAGGAATAAACACATCACATGGATTCGTGAAGGAAAAGCGTTAACACAAATGAACGTAACTGGAACTGGAGGCGTGTTTTAAAGGTGTTGGTTAAGAAACCGGCTGAGGGGagattaaacattataaactttAAGGGCTTTGTACTGACATTCACCTTAAAAATCATGCAGTGCCCTTAAAgccaaataaattatttaataaaatattaaacaaaacaaaaaaaaaatcagaagagGAGCTGAACTGAGCACTGATTCCTAAACGTGTGTTTTCATCATTCGAGCACTTTAAACACGCAGCGTTAGATCTTCGAGGCGTTACACGGCTAAGCTAACCGTGCCGCGCCTTCCCGTCGCTAGTCACGCAGCTCCACGCCAACGCACTGCATGATTAGCATGATTAGCATGATTAGCGCTCGGATTCTCGAACTCGTTCAGTGCCAGGTTTACGGTTTTATCATCAACGAGAGGTTTCCTCGTGCGCTCGGATTCTAACCGGCCAAATCCACTGcacggttttttttttcctgatgctGCACCTGAACAAAGCGCAGTTCAGCGTCACAAAGGAAAAACTGATGCTCAGGTTTGTTCTTACGCCGGCTGAATCAAAGCTACGTCGTATCGCTCGGCTTCCAACACAAAATCGACGCGAGTGATggataaacaaatgaaaagtgtgtgtgttcctctaaGGCTGATTTGCGACGTGACATCATCAGAGCATAGCAAGAAGTGGGTTCTTCAAAAAACAAGGAACAGGACTGCTGACGCCCAGCTGCTGGTGGGTCTCTGCATTCCTCTGTCcggacagatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaagtcGACCTCCGCTCACACACTAGCAGTGCTCGAGGTAATCGATGACCCGAGAGATCGACTTCTGGCCCGTGGTGCCCATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223359 True 1456 lncRNA 0.42 2 692959 694469

Neighbor

gene id symbol gene type direction distance location
LOC117598554 NA coding upstream 417513 274381 ~ 275446 (+)
si:ch211-207i20.2 LOC108274000 coding upstream 541505 139859 ~ 151454 (+)
LOC113535195 LOC108273631 coding upstream 556171 134237 ~ 136788 (+)
LOC113535310 NA coding upstream 567120 121267 ~ 125839 (+)
LOC113536986 LOC108273772,LOC108273771 coding upstream 587039 83710 ~ 105920 (+)
btbd16 btbd16 coding downstream 26582 721051 ~ 753040 (+)
htra1b htra1,LOC107660481 coding downstream 99969 794438 ~ 823982 (+)
zgc:174164 NA coding downstream 141582 836051 ~ 856083 (+)
get4 get4,LOC104959995,LOC103374619 coding downstream 163599 858068 ~ 867809 (+)
LOC113535268 NA coding downstream 194707 889176 ~ 920532 (+)
G188681 NA non-coding upstream 57976 634400 ~ 634983 (+)
G188605 NA non-coding upstream 180983 509030 ~ 511976 (+)
LOC113535322 NA non-coding upstream 438211 243923 ~ 254748 (+)
G188466 NA non-coding upstream 510084 157512 ~ 182875 (+)
LOC113537089 NA non-coding upstream 684444 8047 ~ 8515 (+)
G188715 NA non-coding downstream 45957 740426 ~ 741752 (+)
G188730 NA non-coding downstream 139634 834103 ~ 834569 (+)
G188744 NA non-coding downstream 210997 905466 ~ 913373 (+)
G188747 NA non-coding downstream 228136 922605 ~ 922805 (+)
G188749 NA non-coding downstream 229816 924285 ~ 924490 (+)
ccser2b ccser2 other upstream 470540 137521 ~ 222419 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other downstream 30564 725033 ~ 784991 (+)
LOC113535146 LOC108261429 other downstream 263063 957532 ~ 974218 (+)
LOC117598477 NA other downstream 873047 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1243218 1937687 ~ 1952224 (+)
pyyb NA other downstream 1830587 2525056 ~ 2528820 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110499017 LOC106589183 misc NC_048584.1 CM023238.2 14222149 ~ 14225479 (+)