G188747


Basic Information

Item Value
gene id G188747
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 922605 ~ 922805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223426
cgtctctTAATGCTTCAGATAGAATGCGTTCGCTGAGCAATAACGAGTCTTGtcggtctcacacacacacacacacacacacacacgctcagcaGGAGGACATGCTGGGGATATTTCCTGCCAAGAGCATGAATTTCCTGCTGAATAATTGAAAATGGCTCGAGTGTAAACAGCGAGAGAGGGATCAGACAGAAGCGAGAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU223426 True 201 lncRNA 0.48 1 922605 922805

Neighbor

gene id symbol gene type direction distance location
LOC113535268 NA coding upstream 2073 889176 ~ 920532 (+)
get4 get4,LOC104959995,LOC103374619 coding upstream 54796 858068 ~ 867809 (+)
zgc:174164 NA coding upstream 66522 836051 ~ 856083 (+)
htra1b htra1,LOC107660481 coding upstream 98623 794438 ~ 823982 (+)
btbd16 btbd16 coding upstream 169565 721051 ~ 753040 (+)
LOC113535123 NA coding downstream 53718 976523 ~ 996803 (+)
dbf4b NA coding downstream 75982 998787 ~ 1009835 (+)
adam11 LOC108431418 coding downstream 91124 1013929 ~ 1046212 (+)
fkbp10b fkbp10,LOC108273773 coding downstream 132986 1055791 ~ 1065735 (+)
LOC113535337 NA coding downstream 157158 1079963 ~ 1111182 (+)
G188744 NA non-coding upstream 9232 905466 ~ 913373 (+)
G188730 NA non-coding upstream 88036 834103 ~ 834569 (+)
G188715 NA non-coding upstream 180853 740426 ~ 741752 (+)
G188694 NA non-coding upstream 228136 692959 ~ 694469 (+)
G188681 NA non-coding upstream 287622 634400 ~ 634983 (+)
G188749 NA non-coding downstream 1480 924285 ~ 924490 (+)
G188761 NA non-coding downstream 51992 974797 ~ 975865 (+)
G188770 NA non-coding downstream 123695 1046500 ~ 1050620 (+)
G189170 NA non-coding downstream 622993 1545798 ~ 1546582 (+)
G189190 NA non-coding downstream 687021 1609826 ~ 1612220 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 137614 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 700186 137521 ~ 222419 (+)
LOC113535146 LOC108261429 other downstream 34727 957532 ~ 974218 (+)
LOC117598477 NA other downstream 644711 1567516 ~ 1665813 (+)
LOC117598558 NA other downstream 1014882 1937687 ~ 1952224 (+)
pyyb NA other downstream 1602251 2525056 ~ 2528820 (+)
G189864 NA other downstream 1837888 2760693 ~ 2761010 (+)

Expression


Co-expression Network