G188909


Basic Information

Item Value
gene id G188909
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 509031 ~ 511009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223616
Gcgattataacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattataacttctgtatccacgtgtataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattat
>TU223617
cttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattataacttctgtatccacgtatataacgcgattataacttctgtatccacgcgtatataacgcgattatgacttctgtatccacgtatataacgcgattataacttctgtatccacgtgtataacgcgattataacttctgtatccacgtgtataacgcgattataacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattataacttctgtatccacgtgtataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223616 False 232 lncRNA 0.37 2 509031 509294
TU223617 True 480 lncRNA 0.37 3 509031 511009

Neighbor

gene id symbol gene type direction distance location
LOC117598555 NA coding upstream 121994 633003 ~ 636382 (-)
waplb wapl,LOC108435041 coding upstream 181939 692948 ~ 718933 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding upstream 357028 868037 ~ 879127 (-)
becn1 becn1,atg6 coding upstream 371685 882694 ~ 888949 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding upstream 415179 926188 ~ 943327 (-)
G188908 NA non-coding downstream 360 506908 ~ 508671 (-)
LOC113535197 LOC108273631 non-coding downstream 369297 135208 ~ 139734 (-)
G188918 NA non-coding upstream 22498 533507 ~ 534276 (-)
G188923 NA non-coding upstream 34615 545624 ~ 773583 (-)
G188929 NA non-coding upstream 180590 691599 ~ 784981 (-)
G188922 NA non-coding upstream 259444 770453 ~ 772015 (-)
G189010 NA non-coding upstream 320811 831820 ~ 832815 (-)
LOC117598518 NA other upstream 125488 636497 ~ 638042 (-)
c12h10orf88 c13h10orf88 other upstream 237729 748738 ~ 834760 (-)
G189180 NA other upstream 1053881 1564890 ~ 1565260 (-)
G189199 NA other upstream 1057277 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 1249825 1760834 ~ 1773520 (-)

Expression


Co-expression Network