Gene
RNA
| Item | Value |
|---|---|
| gene id | G189077 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 1013917 ~ 1028653 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223808 | True | 371 | lncRNA | 0.58 | 2 | 1013917 | 1028653 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113535162 | NA | coding | downstream | 58076 | 944848 ~ 955841 (-) |
| LOC113535267 | rnd2,LOC108273785,LOC103364924,LOC102195949 | coding | downstream | 70590 | 926188 ~ 943327 (-) |
| becn1 | becn1,atg6 | coding | downstream | 124968 | 882694 ~ 888949 (-) |
| vps35l | c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 | coding | downstream | 134790 | 868037 ~ 879127 (-) |
| waplb | wapl,LOC108435041 | coding | downstream | 294984 | 692948 ~ 718933 (-) |
| LOC113535098 | LOC108273774 | coding | upstream | 37271 | 1065924 ~ 1073226 (-) |
| LOC113535205 | NA | coding | upstream | 585343 | 1613996 ~ 1619414 (-) |
| LOC117598490 | NA | coding | upstream | 594027 | 1622680 ~ 1650547 (-) |
| LOC113535291 | LOC108273550 | coding | upstream | 748151 | 1776804 ~ 1804114 (-) |
| si:ch211-217a12.1 | si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 | coding | upstream | 783914 | 1812567 ~ 1822814 (-) |
| G189050 | NA | non-coding | downstream | 87861 | 925824 ~ 926056 (-) |
| G189035 | NA | non-coding | downstream | 133680 | 879745 ~ 880237 (-) |
| G189010 | NA | non-coding | downstream | 181102 | 831820 ~ 832815 (-) |
| G188929 | NA | non-coding | downstream | 228936 | 691599 ~ 784981 (-) |
| G188923 | NA | non-coding | downstream | 240334 | 545624 ~ 773583 (-) |
| G189090 | NA | non-coding | upstream | 12088 | 1040741 ~ 1041113 (-) |
| G189056 | NA | non-coding | upstream | 17456 | 1046109 ~ 1047784 (-) |
| G189067 | NA | non-coding | upstream | 36517 | 1065170 ~ 1071217 (-) |
| G189145 | NA | non-coding | upstream | 276513 | 1305166 ~ 1370050 (-) |
| G189149 | NA | non-coding | upstream | 361710 | 1390363 ~ 1391921 (-) |
| c12h10orf88 | c13h10orf88 | other | downstream | 179157 | 748738 ~ 834760 (-) |
| LOC117598518 | NA | other | downstream | 375875 | 636497 ~ 638042 (-) |
| G189180 | NA | other | upstream | 536237 | 1564890 ~ 1565260 (-) |
| G189199 | NA | other | upstream | 539633 | 1568286 ~ 1571073 (-) |
| LOC113534879 | NA | other | upstream | 732181 | 1760834 ~ 1773520 (-) |
| ppp1r16a | ppp1r16a | other | upstream | 796382 | 1825035 ~ 1869993 (-) |
| LOC113547489 | NA | other | upstream | 1165691 | 2194344 ~ 2210979 (-) |
