G189149


Basic Information

Item Value
gene id G189149
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1390363 ~ 1391921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223882
CTGTGTTTAATTTAAGTTATCCAACATCAAACACACTATATTATAGTGACATTGATATTATAATAAACCAGGAAGCACTGCATTCACATGGCTGAATATAATATAGAACCAGTACATGAAATGTGCCAACACTAACAGAGTAAAAAAAGCAACATGCAACATTAACTCTGTTACACTAAATACTATTCTGTAACCATGCTTTCCTTCATACAGAGAGTCAAAAACAActctattttcatatttattgttacatttactttgtacattttaatttcacaatgtTGTAACACACAGCATGCCATGTTTCCTCTTGCTGCAAGCtgtcataacttttgaaatgcaaaaagaacaaaaaataataataatacagatagCTGTCCTGCTGATATTAATGCAGCATTATACACttgtagtttttctttttttatgaaatacttttattacacacactcatgtctaGTTTTAAAGGTAtacaaaatcttttaaaattttcCTGCGTTCCTGTACAGAATGTTATACACAATTATAGAAATACACTGTTTTACTTATAGTACCTTTCAAGCATCactattagattagattagactaaactttattgtcattgtgcagagtacaagtaaAGAGCctatgaaatgcagtttttcgcATATcccttgctaggaagctggggtcagagcacagggtcagccatgatacagctcCACTGGAGCAGAtatggttaagggccttgctcaagtgccTGAATGCtacagaacaccaaactgcaaAAGTTCTTCTTCATGATTAACTCATTTTGTGCATATTGTTAGTCACATCTggcacaatcttttttttttccctcataagttagtgaggaccacacaattgttatttaggcactgataaataaaaaacaacacaaaattgAAGGAgggtttactttctttttcccaaaaaaaaaaggtttattctTGAGTAAAAATATATGATAAGCCCActgtaataagaaaaatgtattacacTGTCTTTATCATTAGTGTATGGAGGTACTGTATACAGCTGAACATATAATGAGTCTAAGTAAATTAACTGTGGGTCaggttttacttttttgttatttccaGACAATAAACATGTATATGTTTAAACTCTATgtagttatataaataattactgtAGCGTGAAAGAACGTGGGATACATCTTACCTGCTAAGACCCTGAGGGCTGAG
>TU223885
CTGTGTTTAATTTAAGTTATCCAACATCAAACACACTATATTATAGTGACATTGATATTATAATAAACCAGGAAGCACTGCATTCACATGGCTGAATATAATATAGAACCAGTACATGAAATGTGCCAACACTAACAGAGTAAAAAAAGCAACATGCAACATTAACTCTGTTACACTAAATACTATTCTGTAACCATGCTTTCCTTCATACAGAGAGTCAAAAACAActctattttcatatttattgttacatttactttgtacattttaatttcacaatgtTGTAACACACAGCATGCCATGTTTCCTCTTGCTGCAAGCtgtcataacttttgaaatgcaaaaagaacaaaaaataataataatacagatagCTGTCCTGCTGATATTAATGCAGCATTATACACttgtagtttttctttttttatgaaatacttttattacacacactcatgtctaGTTTTAAAGGTAtacaaaatcttttaaaattttcCTGCGTTCCTGTACAGAATGTTATACACAATTATAGAAATACACTGTTTTACTTATAGTACCTTTCAAGCATCactattagattagattagactaaactttattgtcattgtgcagagtacaagtaaAGAGCctatgaaatgcagtttttcgcATATcccttgctaggaagctggggtcagagcacagggtcagccatgatacagctcCACTGGAGCAGAtatggttaagggccttgctcaagtgccTGAATGCtacagaacaccaaactgcaaAAGTTCTTCTTCATGATTAACTCATTTTGTGCATATTGTTAGTCACATCTggcacaatcttttttttttccctcataagttagtgaggaccacacaattgttatttaggcactgataaataaaaaacaacacaaaattgAAGGAgggtttactttctttttcccatgactgtatatcaCAGCCAGAAGTCAGATCATTTTATGCTGTGTTGCATAGATTAATCAACTAAAACAGGCACTAGGGGGCGCTGTGGGAAAAAAGGTGACGGAAAACCCCAGCAAGTCAGAAAGGTAAAGAAAGCAGGTAAATGTACTTTGGCAATCTTCTGGGTTTATGTTTGAG

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223882 True 1208 lncRNA 0.33 3 1390363 1391921
TU223885 False 1109 lncRNA 0.35 2 1390673 1391921

Neighbor

gene id symbol gene type direction distance location
LOC113535098 LOC108273774 coding downstream 317137 1065924 ~ 1073226 (-)
LOC113535162 NA coding downstream 434522 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 447036 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 501414 882694 ~ 888949 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding downstream 511236 868037 ~ 879127 (-)
LOC113535205 NA coding upstream 222075 1613996 ~ 1619414 (-)
LOC117598490 NA coding upstream 230759 1622680 ~ 1650547 (-)
LOC113535291 LOC108273550 coding upstream 384883 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 420646 1812567 ~ 1822814 (-)
oplah oplah coding upstream 496895 1888816 ~ 1903996 (-)
G189145 NA non-coding downstream 20313 1305166 ~ 1370050 (-)
G189067 NA non-coding downstream 319146 1065170 ~ 1071217 (-)
G189056 NA non-coding downstream 342579 1046109 ~ 1047784 (-)
G189090 NA non-coding downstream 349250 1040741 ~ 1041113 (-)
G189077 NA non-coding downstream 361710 1013917 ~ 1028653 (-)
G189161 NA non-coding upstream 61983 1453904 ~ 1533954 (-)
G189174 NA non-coding upstream 155775 1547696 ~ 1548722 (-)
G189200 NA non-coding upstream 178187 1570108 ~ 1602249 (-)
G189206 NA non-coding upstream 194210 1586131 ~ 1588600 (-)
LOC117598583 NA non-coding upstream 309129 1701050 ~ 1701433 (-)
c12h10orf88 c13h10orf88 other downstream 555603 748738 ~ 834760 (-)
LOC117598518 NA other downstream 752321 636497 ~ 638042 (-)
G189180 NA other upstream 172969 1564890 ~ 1565260 (-)
G189199 NA other upstream 176365 1568286 ~ 1571073 (-)
LOC113534879 NA other upstream 368913 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 433114 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 802423 2194344 ~ 2210979 (-)

Expression


Co-expression Network