Gene
RNA
| Item | Value |
|---|---|
| gene id | G189199 |
| gene name | NA |
| gene type | unknown |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 1568286 ~ 1571073 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU223956 | True | 728 | TUCP | 0.41 | 4 | 1568286 | 1571073 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113535098 | LOC108273774 | coding | downstream | 495060 | 1065924 ~ 1073226 (-) |
| LOC113535162 | NA | coding | downstream | 612445 | 944848 ~ 955841 (-) |
| LOC113535267 | rnd2,LOC108273785,LOC103364924,LOC102195949 | coding | downstream | 624959 | 926188 ~ 943327 (-) |
| becn1 | becn1,atg6 | coding | downstream | 679337 | 882694 ~ 888949 (-) |
| vps35l | c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 | coding | downstream | 689159 | 868037 ~ 879127 (-) |
| LOC113535205 | NA | coding | upstream | 42923 | 1613996 ~ 1619414 (-) |
| LOC117598490 | NA | coding | upstream | 51607 | 1622680 ~ 1650547 (-) |
| LOC113535291 | LOC108273550 | coding | upstream | 205731 | 1776804 ~ 1804114 (-) |
| si:ch211-217a12.1 | si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 | coding | upstream | 241494 | 1812567 ~ 1822814 (-) |
| oplah | oplah | coding | upstream | 317743 | 1888816 ~ 1903996 (-) |
| G189174 | NA | non-coding | downstream | 19564 | 1547696 ~ 1548722 (-) |
| G189161 | NA | non-coding | downstream | 34332 | 1453904 ~ 1533954 (-) |
| G189149 | NA | non-coding | downstream | 176365 | 1390363 ~ 1391921 (-) |
| G189145 | NA | non-coding | downstream | 198236 | 1305166 ~ 1370050 (-) |
| G189067 | NA | non-coding | downstream | 497069 | 1065170 ~ 1071217 (-) |
| G189206 | NA | non-coding | upstream | 15058 | 1586131 ~ 1588600 (-) |
| LOC117598583 | NA | non-coding | upstream | 129977 | 1701050 ~ 1701433 (-) |
| G189233 | NA | non-coding | upstream | 136291 | 1707364 ~ 1707706 (-) |
| G189354 | NA | non-coding | upstream | 253209 | 1824282 ~ 1824948 (-) |
| G189381 | NA | non-coding | upstream | 316511 | 1887584 ~ 1887870 (-) |
| G189180 | NA | other | downstream | 3026 | 1564890 ~ 1565260 (-) |
| c12h10orf88 | c13h10orf88 | other | downstream | 733526 | 748738 ~ 834760 (-) |
| LOC117598518 | NA | other | downstream | 930244 | 636497 ~ 638042 (-) |
| LOC113534879 | NA | other | upstream | 189761 | 1760834 ~ 1773520 (-) |
| ppp1r16a | ppp1r16a | other | upstream | 253962 | 1825035 ~ 1869993 (-) |
| LOC113547489 | NA | other | upstream | 623271 | 2194344 ~ 2210979 (-) |
| smarcd2 | smarcd2,LOC107569192,LOC107694073,LOC107684754 | other | upstream | 1020164 | 2591237 ~ 2609773 (-) |
| LOC113547504 | LOC108273577,LOC108273573 | other | upstream | 1215008 | 2786081 ~ 2811391 (-) |
