G189206


Basic Information

Item Value
gene id G189206
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1586131 ~ 1588600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU223969
GAGAATAAGCAAATGAggaagaggagtgtgtgtgttttgagatggTGTGATATCTtcaattccagtgaagggaaatcttctGTATCTTTTGTATTCTACTGTGATATACAGTCACACTCCTAAATCAGGGTCATAGTGGCAACCTAGAGAGCACAGAAGCCAGACTTCTCCAACTCAGGCAACTTTCTCCAGCAAGCCAAAAAAAGGAGAACCAAAGATATTCCGTAACCAGCAAATTGCCTTTGATATACCTTTAGCAGAAAGTGCCCGGGGTCATCCTTTCCAGAATCCCAAACTACCTCTGCTCAACAAGGACGAGCAACCGTTGTACTCTCTATTTCTTCCAGATTGCTGAGGAACTAGTGCCTTACGAGAGTCTTACGGCTCAGGTAAAATCAGGTATAGTGACCACGTAACCGCCAATGTCGTACATAAACTGTGGTCAATCTTGCACACCGTTTTCCCATTACTCGTAAATAAACAGCCAAAAACACATGGGGTAAAGTATTCCTCCCTTACCTGGGGAACTGCCCCCTGGTTCAAGCCAGGATCCTGATCTCGGATACTGCCAATGAAAATCAGACCAGAAAGTAGACAAGGCCACGTAACTGCCAAAATCATACCACCAGGCACAACACTGGCAAAGTCCACAACCCACATTGAACAAGTCTGATTTCAAGAATGGCAACCTTGGACCTTATTCTGAAATGTACAAGGACCAAATGGCTCCAGCAGTGGCCCCAGCACTCCATACTCCAGAAGCATCTCTCACAGAATACATCAGATGATGTACCTGCCTCATGGAAGAACTGAAAATCTCCAGTGATCTCTTGATTACCTGTGAGATGATCAAAATCTGATCTTCCAATTTCTAGTGAATCTGAAGTTCAAGTATCAGTTGGAGCCTCCTTTCCAATACACTGGCTTTTCCACAATACTTGATCATGATGTACCAAGTCAGATACTAGGTGTAGGTCAGCCATGACAGTCCCCCAACATCCAGGGCTTTGAAGAATTCCCGGCTAAACTTCCCTGCTACTGAGGAGCGTTCAAACTACCTCAGTGACACTGACAAGCAAAATTGGTTGGATTCCCTAGAAGCCACTCGTCCTGGTTCCTGCAAGAAAGAAATGCTCTTCAGGTTTAGGAGTTGTTTGAATTTGATTTGAGATATCATAAGGTGGTGAAATATGCCTTCATTGTTCTTGCAAAACACTGCATGATCCATGTCTCGCTTTCCTTTCCGAAGCATGTCTTTCCATGGTCTTTCCAAAATGACACCACACCCTAGCGTTTGCAAACTGAGCTGCTGCCCCCAAGGCAACGAAGCTGTAAGATTTGTAATCACTTCCTTCTTCTGTCTTCCACTTGAAGGCCACCCTCACTACCAGGGCCCACCAACAGGTTTTCAGCTGGGTAGGTGCTGACAAGTTTTGGCCACAACTACGTTAAGCTGCTACCTCTTCCAGTATGTGAGAAAACAGAGCTGAAATCTTTCCAGACAGTTTCCACCCCAACCAACCTTAACTACACATTTGAACTTACCAGGATCCACCACACCATCTGATCCAACTCACCTCTGGATGGCAAACGGTGGAAAAATCAACATCTCTTCATCTTGGCGACATGCGCAGATGGCCAATAACATCCCACTACTGGAGTTCAGACCAGGCAGGACGTTCTTTGCAATGACTTCATTCCGTATTTCCTGGCCATGTGCAATAAAGTTCCCCAGTCAAACAATGGCACCTGTGGTTTCCACCTCTCACCAGAAACCCACCCACTTTCTCCAAGAAGGTTGAAAACTCACAGAATTTAACATTACCCCTTCGAAACGTTCTCTGACTGGTGGACACATATGGTCCACACATCTTCGCCTCCCCTCAGGTTGAGCCTGATCCCCCAGTCGCTTGGCTGTCAACTCTACCTCCCACCTTGAGGAGTAGGAGTTTCAAGcttggtttaatttaaaaaaaaaaaaaaaaaagccaggtgGTTTCTAATTACCTGGTGGAACTCCGGGTTTGGGCTTTTTAGCCGGTGTGATGTCGCAGTTAGGTCTGTGCTCAGAAAATGAAGCAGTTCTGGTTGTTGCTGGAGTctgagagggaggaagagaaatCAGTAACCAATAAGTatgaaatatacacatatatatgaaCAAGTGTATATAAAAGTGCTACTCAGTATAAATTGGATAAGGGAATTAATAAGAACAATATCTATGGATGCTCACGCACCGCAGCACTGCTACTCGAATTAAGCAGGAAGTTGGCAGTGTGGGCGGCAACCGGAGGCTGATTCGGGATTGGGCGATGTCCAAGCGCCATGCCAACAATGGCAGTCATGTGAGTCTCTGTGCCGAACACGTGGATGGGAATCCCAGTGGTCTTTCc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223969 True 2396 lncRNA 0.46 2 1586131 1588600

Neighbor

gene id symbol gene type direction distance location
LOC113535098 LOC108273774 coding downstream 512905 1065924 ~ 1073226 (-)
LOC113535162 NA coding downstream 630290 944848 ~ 955841 (-)
LOC113535267 rnd2,LOC108273785,LOC103364924,LOC102195949 coding downstream 642804 926188 ~ 943327 (-)
becn1 becn1,atg6 coding downstream 697182 882694 ~ 888949 (-)
vps35l c13h16orf62,cunh16orf62,zgc:163107,cssa28h16orf62 coding downstream 707004 868037 ~ 879127 (-)
LOC113535205 NA coding upstream 25396 1613996 ~ 1619414 (-)
LOC117598490 NA coding upstream 34080 1622680 ~ 1650547 (-)
LOC113535291 LOC108273550 coding upstream 188204 1776804 ~ 1804114 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding upstream 223967 1812567 ~ 1822814 (-)
oplah oplah coding upstream 300216 1888816 ~ 1903996 (-)
G189174 NA non-coding downstream 37409 1547696 ~ 1548722 (-)
G189161 NA non-coding downstream 52177 1453904 ~ 1533954 (-)
G189149 NA non-coding downstream 194210 1390363 ~ 1391921 (-)
G189145 NA non-coding downstream 216081 1305166 ~ 1370050 (-)
G189067 NA non-coding downstream 514914 1065170 ~ 1071217 (-)
LOC117598583 NA non-coding upstream 112450 1701050 ~ 1701433 (-)
G189233 NA non-coding upstream 118764 1707364 ~ 1707706 (-)
G189354 NA non-coding upstream 235682 1824282 ~ 1824948 (-)
G189381 NA non-coding upstream 298984 1887584 ~ 1887870 (-)
G189385 NA non-coding upstream 316262 1904862 ~ 1906435 (-)
G189199 NA other downstream 15058 1568286 ~ 1571073 (-)
G189180 NA other downstream 20871 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 751371 748738 ~ 834760 (-)
LOC117598518 NA other downstream 948089 636497 ~ 638042 (-)
LOC113534879 NA other upstream 172234 1760834 ~ 1773520 (-)
ppp1r16a ppp1r16a other upstream 236435 1825035 ~ 1869993 (-)
LOC113547489 NA other upstream 605744 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 1002637 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 1197481 2786081 ~ 2811391 (-)

Expression


Co-expression Network