Gene
RNA
| Item | Value |
|---|---|
| gene id | G189245 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 1775605 ~ 1776432 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU224019 | True | 828 | lncRNA | 0.33 | 1 | 1775605 | 1776432 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC117598580 | NA | coding | upstream | 61108 | 1709949 ~ 1714497 (+) |
| klhl11 | klhl11,LOC107674689,LOC107556757,LOC107551837 | coding | upstream | 166708 | 1600541 ~ 1608897 (+) |
| aclyb | LOC108431393,LOC103369716 | coding | upstream | 173340 | 1579297 ~ 1602265 (+) |
| LOC117598650 | NA | coding | upstream | 209842 | 1564045 ~ 1565763 (+) |
| LOC113535294 | LOC108273771,LOC108273772 | coding | upstream | 283394 | 1488171 ~ 1492211 (+) |
| LOC113535035 | NA | coding | downstream | 62331 | 1838763 ~ 1844749 (+) |
| LOC113535036 | NA | coding | downstream | 69796 | 1846228 ~ 1851194 (+) |
| foxh1 | LOC108273808 | coding | downstream | 99222 | 1875654 ~ 1882978 (+) |
| stat5b | LOC108273804,LOC108431398,LOC107716464,LOC107653267 | coding | downstream | 128776 | 1905208 ~ 1919420 (+) |
| ghdc | ghdc | coding | downstream | 149967 | 1926399 ~ 1935741 (+) |
| G189190 | NA | non-coding | upstream | 163385 | 1609826 ~ 1612220 (+) |
| G189170 | NA | non-coding | upstream | 229023 | 1545798 ~ 1546582 (+) |
| G188770 | NA | non-coding | upstream | 724985 | 1046500 ~ 1050620 (+) |
| G188761 | NA | non-coding | upstream | 799740 | 974797 ~ 975865 (+) |
| G188749 | NA | non-coding | upstream | 851115 | 924285 ~ 924490 (+) |
| G189280 | NA | non-coding | downstream | 86770 | 1863202 ~ 1863652 (+) |
| G189293 | NA | non-coding | downstream | 111218 | 1887650 ~ 1887870 (+) |
| LOC117598584 | NA | non-coding | downstream | 147552 | 1923984 ~ 1925704 (+) |
| G189477 | NA | non-coding | downstream | 366720 | 2143152 ~ 2145756 (+) |
| G189555 | NA | non-coding | downstream | 518654 | 2295086 ~ 2295305 (+) |
| LOC117598477 | NA | other | upstream | 109792 | 1567516 ~ 1665813 (+) |
| LOC113535146 | LOC108261429 | other | upstream | 801387 | 957532 ~ 974218 (+) |
| plekha1b | plekha1,LOC107716481,LOC107660484 | other | upstream | 990614 | 725033 ~ 784991 (+) |
| ccser2b | ccser2 | other | upstream | 1553186 | 137521 ~ 222419 (+) |
| LOC117598558 | NA | other | downstream | 161255 | 1937687 ~ 1952224 (+) |
| pyyb | NA | other | downstream | 748624 | 2525056 ~ 2528820 (+) |
| G189864 | NA | other | downstream | 984261 | 2760693 ~ 2761010 (+) |
| LOC113547538 | NA | other | downstream | 1193693 | 2970125 ~ 3021609 (+) |
| G190028 | NA | other | downstream | 1462012 | 3238444 ~ 3239216 (+) |
