G189280


Basic Information

Item Value
gene id G189280
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1863202 ~ 1863652 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224061
GCAAACTTCACAGCCACATCAGGGAGAGCCACAGTCGACAACAAGTTGATTTGACATCAACAAAAGGGTCCAGGGTGAAGATGCATTGGGGATGATAAGATGGTGAAGATGCTACACTCCAGGGAGTATGCTCTGCCATAAACAGTGTGTCTGCTGCGCCATTGTGCCATCCTGGCAAATGAGTTGAGTCTAACCGTGGGTGGGCCCACTTCAGGAGCACTCATGCAAGCCATCTGACCTCGTGCCACCCTGGTAATGTTGTACAGACCAGCACGTGGTTGTCTCAGAACCAGTAAGGTGAGTTTGTAGGCTTGATATACCACCCAATTCcaggtggtggtggaggtgttCTATGACTTCACACTCCTTCAGCACCTCTATAGTACCACACTGTCCCCCAGCTAGTAAGGGAGGCATCCTTGGTGACAATCTCTCCAAATTGAACCTTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224061 True 451 lncRNA 0.50 1 1863202 1863652

Neighbor

gene id symbol gene type direction distance location
LOC113535036 NA coding upstream 12008 1846228 ~ 1851194 (+)
LOC113535035 NA coding upstream 18453 1838763 ~ 1844749 (+)
LOC117598580 NA coding upstream 148705 1709949 ~ 1714497 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding upstream 254305 1600541 ~ 1608897 (+)
aclyb LOC108431393,LOC103369716 coding upstream 260937 1579297 ~ 1602265 (+)
foxh1 LOC108273808 coding downstream 12002 1875654 ~ 1882978 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 41556 1905208 ~ 1919420 (+)
ghdc ghdc coding downstream 62747 1926399 ~ 1935741 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 122868 1986520 ~ 1991390 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 128765 1992417 ~ 2049358 (+)
G189245 NA non-coding upstream 86770 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 250982 1609826 ~ 1612220 (+)
G189170 NA non-coding upstream 316620 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 812582 1046500 ~ 1050620 (+)
G188761 NA non-coding upstream 887337 974797 ~ 975865 (+)
G189293 NA non-coding downstream 23998 1887650 ~ 1887870 (+)
LOC117598584 NA non-coding downstream 60332 1923984 ~ 1925704 (+)
G189477 NA non-coding downstream 279500 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 431434 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 444574 2308226 ~ 2309418 (+)
LOC117598477 NA other upstream 197389 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 888984 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1078211 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1640783 137521 ~ 222419 (+)
LOC117598558 NA other downstream 74035 1937687 ~ 1952224 (+)
pyyb NA other downstream 661404 2525056 ~ 2528820 (+)
G189864 NA other downstream 897041 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1106473 2970125 ~ 3021609 (+)
G190028 NA other downstream 1374792 3238444 ~ 3239216 (+)

Expression


Co-expression Network