G189293


Basic Information

Item Value
gene id G189293
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1887650 ~ 1887870 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224082
tgaGTAACAGAATCGCACTGGTTTACACTGGAGTGAGCCGTACAGTGGACACaatttctttttatccatttacggTTACATTTAATCGGCTTCCCTCGTTGCGTGCGAGTGCTCCGGCACTGCGGGCGGCGCTGTGGTCACCTAATCCGTGTGTGTGAGGTGCAAATCAGGCAGGAGGCGAGATCAGGTAGTGATGATGCTGCCCAATCTCTACCCCACAC

Function

GO:

id name namespace
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224082 True 221 lncRNA 0.52 1 1887650 1887870

Neighbor

gene id symbol gene type direction distance location
foxh1 LOC108273808 coding upstream 4672 1875654 ~ 1882978 (+)
LOC113535036 NA coding upstream 36456 1846228 ~ 1851194 (+)
LOC113535035 NA coding upstream 42901 1838763 ~ 1844749 (+)
LOC117598580 NA coding upstream 173153 1709949 ~ 1714497 (+)
klhl11 klhl11,LOC107674689,LOC107556757,LOC107551837 coding upstream 278753 1600541 ~ 1608897 (+)
stat5b LOC108273804,LOC108431398,LOC107716464,LOC107653267 coding downstream 17338 1905208 ~ 1919420 (+)
ghdc ghdc coding downstream 38529 1926399 ~ 1935741 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding downstream 98650 1986520 ~ 1991390 (+)
drosha drosha,rnasen,LOC107556767 coding downstream 104547 1992417 ~ 2049358 (+)
LOC113535349 LOC108273450 coding downstream 216455 2104325 ~ 2117109 (+)
G189280 NA non-coding upstream 23998 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 111218 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 275430 1609826 ~ 1612220 (+)
G189170 NA non-coding upstream 341068 1545798 ~ 1546582 (+)
G188770 NA non-coding upstream 837030 1046500 ~ 1050620 (+)
LOC117598584 NA non-coding downstream 36114 1923984 ~ 1925704 (+)
G189477 NA non-coding downstream 255282 2143152 ~ 2145756 (+)
G189555 NA non-coding downstream 407216 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 420356 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 429448 2317318 ~ 2318307 (+)
LOC117598477 NA other upstream 221837 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 913432 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1102659 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1665231 137521 ~ 222419 (+)
LOC117598558 NA other downstream 49817 1937687 ~ 1952224 (+)
pyyb NA other downstream 637186 2525056 ~ 2528820 (+)
G189864 NA other downstream 872823 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 1082255 2970125 ~ 3021609 (+)
G190028 NA other downstream 1350574 3238444 ~ 3239216 (+)

Expression


Co-expression Network