Gene
RNA
| Item | Value |
|---|---|
| gene id | G189354 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 1824282 ~ 1824948 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU224154 | True | 667 | lncRNA | 0.29 | 1 | 1824282 | 1824948 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch211-217a12.1 | si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 | coding | downstream | 1468 | 1812567 ~ 1822814 (-) |
| LOC113535291 | LOC108273550 | coding | downstream | 20168 | 1776804 ~ 1804114 (-) |
| LOC117598490 | NA | coding | downstream | 173735 | 1622680 ~ 1650547 (-) |
| LOC113535205 | NA | coding | downstream | 204868 | 1613996 ~ 1619414 (-) |
| LOC113535098 | LOC108273774 | coding | downstream | 751056 | 1065924 ~ 1073226 (-) |
| oplah | oplah | coding | upstream | 63868 | 1888816 ~ 1903996 (-) |
| kcnh4b | LOC108273803,LOC103352817 | coding | upstream | 116748 | 1941696 ~ 1982877 (-) |
| LOC113535332 | LOC108274177 | coding | upstream | 227836 | 2052784 ~ 2078967 (-) |
| buc2l | LOC108273451 | coding | upstream | 294254 | 2119202 ~ 2123272 (-) |
| LOC113534974 | LOC108273474 | coding | upstream | 299787 | 2124735 ~ 2132242 (-) |
| G189233 | NA | non-coding | downstream | 116576 | 1707364 ~ 1707706 (-) |
| LOC117598583 | NA | non-coding | downstream | 122849 | 1701050 ~ 1701433 (-) |
| G189200 | NA | non-coding | downstream | 222033 | 1570108 ~ 1602249 (-) |
| G189206 | NA | non-coding | downstream | 235682 | 1586131 ~ 1588600 (-) |
| G189174 | NA | non-coding | downstream | 275560 | 1547696 ~ 1548722 (-) |
| G189381 | NA | non-coding | upstream | 62636 | 1887584 ~ 1887870 (-) |
| G189385 | NA | non-coding | upstream | 79914 | 1904862 ~ 1906435 (-) |
| G189386 | NA | non-coding | upstream | 94522 | 1919470 ~ 1923367 (-) |
| G189388 | NA | non-coding | upstream | 99078 | 1924026 ~ 1925701 (-) |
| G189411 | NA | non-coding | upstream | 162387 | 1987335 ~ 1988231 (-) |
| LOC113534879 | NA | other | downstream | 50762 | 1760834 ~ 1773520 (-) |
| G189199 | NA | other | downstream | 253209 | 1568286 ~ 1571073 (-) |
| G189180 | NA | other | downstream | 259022 | 1564890 ~ 1565260 (-) |
| c12h10orf88 | c13h10orf88 | other | downstream | 989522 | 748738 ~ 834760 (-) |
| LOC117598518 | NA | other | downstream | 1186240 | 636497 ~ 638042 (-) |
| ppp1r16a | ppp1r16a | other | upstream | 87 | 1825035 ~ 1869993 (-) |
| LOC113547489 | NA | other | upstream | 369396 | 2194344 ~ 2210979 (-) |
| smarcd2 | smarcd2,LOC107569192,LOC107694073,LOC107684754 | other | upstream | 766289 | 2591237 ~ 2609773 (-) |
| LOC113547504 | LOC108273577,LOC108273573 | other | upstream | 961133 | 2786081 ~ 2811391 (-) |
| LOC117598559 | NA | other | upstream | 968098 | 2793046 ~ 2827752 (-) |
