G189381


Basic Information

Item Value
gene id G189381
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1887584 ~ 1887870 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224183
GTGTGGGGTAGAGATTGGGCAGCATCATCACTACCTGATCTCGCCTCCTGCCTGATTTGCACCTCACACACACGGATTAGGTGACCACAGCGCCGCCCGCAGTGCCGGAGCACTCGCACGCAACGAGGGAAGCCGATTAAATGTAAccgtaaatggataaaaagaaattGTGTCCACTGTACGGCTCACTCCAGTGTAAACCAGTGCGATTCTGTTACtcagtcattttaaaacattattaaaatgataaaatgaagaCGGGCCtcactgtgtcttttttttttttt

Function

GO:

id name namespace
GO:0032838 plasma membrane bounded cell projection cytoplasm cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005929 cilium cellular_component
GO:0005930 axoneme cellular_component
GO:0097014 ciliary plasm cellular_component
GO:0022803 passive transmembrane transporter activity molecular_function
GO:0015267 channel activity molecular_function
GO:0005216 ion channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224183 True 287 lncRNA 0.46 1 1887584 1887870

Neighbor

gene id symbol gene type direction distance location
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 64770 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 83470 1776804 ~ 1804114 (-)
LOC117598490 NA coding downstream 237037 1622680 ~ 1650547 (-)
LOC113535205 NA coding downstream 268170 1613996 ~ 1619414 (-)
LOC113535098 LOC108273774 coding downstream 814358 1065924 ~ 1073226 (-)
oplah oplah coding upstream 946 1888816 ~ 1903996 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 53826 1941696 ~ 1982877 (-)
LOC113535332 LOC108274177 coding upstream 164914 2052784 ~ 2078967 (-)
buc2l LOC108273451 coding upstream 231332 2119202 ~ 2123272 (-)
LOC113534974 LOC108273474 coding upstream 236865 2124735 ~ 2132242 (-)
G189354 NA non-coding downstream 62636 1824282 ~ 1824948 (-)
G189233 NA non-coding downstream 179878 1707364 ~ 1707706 (-)
LOC117598583 NA non-coding downstream 186151 1701050 ~ 1701433 (-)
G189200 NA non-coding downstream 285335 1570108 ~ 1602249 (-)
G189206 NA non-coding downstream 298984 1586131 ~ 1588600 (-)
G189385 NA non-coding upstream 16992 1904862 ~ 1906435 (-)
G189386 NA non-coding upstream 31600 1919470 ~ 1923367 (-)
G189388 NA non-coding upstream 36156 1924026 ~ 1925701 (-)
G189411 NA non-coding upstream 99465 1987335 ~ 1988231 (-)
G189412 NA non-coding upstream 101649 1989519 ~ 1990155 (-)
ppp1r16a ppp1r16a other downstream 17591 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 114064 1760834 ~ 1773520 (-)
G189199 NA other downstream 316511 1568286 ~ 1571073 (-)
G189180 NA other downstream 322324 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1052824 748738 ~ 834760 (-)
LOC113547489 NA other upstream 306474 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 703367 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 898211 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 905176 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 964185 2852055 ~ 2855493 (-)

Expression


Co-expression Network