G189385


Basic Information

Item Value
gene id G189385
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1904862 ~ 1906435 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224188
gaaacggtgactaacactaggtagtgcactagatacggtgtgaaacggtgactaacactaggtagtgcactagatacggtgtgaaacggtgactaacactaggtagtgcactagatacagtataaaatagtgactaacactagATAGTGCACTAGATGTTTACTCCACTATGCCTGCTGTGGACTGTAAAAGTAGTTATCTTTAATtagcgtgtgtgcgcgcgctagGGTAACCGTGAAAGTTACAGGAAGTGACGCAATATCATTGACAAACGAATTAACAAACAAATCATGAACACACGTTAGATTATCAAGAGTCGAAGTACCTATAGCAGCTAGGTACATTAGCTTAGCTTAACCTAGCTTACCTTAGCTTATTTTAGCTTATCTTACCAGACATTTTGGATAAATTTAAACTTTATGAACTGTTGAAACACTTAATTCACAGCGGAATATTCTTCTAAAGtcattttacattaaataaacagcactatgtggtgaaggagatgtttaatgcGGGCGGAGAGGCGTTACCtggctaagctaagctaagctaggCTAGGCTAAGCAGGCAGAGGAATGCTATGCTGTGCTAACTAAAAGTGAGCCAAACTGTTGCGCTTTCTGTAACTCAAAGCCAGCAGGAGAGGAGAAAGCGGACGAGTTCGTGCTCGAAACTCACCGATTAGCCGCGTCGCGATTCCAGTCAACACGCCGTCAATCCATCAATGAACATCAGACTGTCATTCAGGCAAAAATGTGCCATGAAAGCAGGAGTTAAAGTTTAGCAGGTTTCCGGAATGGCCGTGTTTGTGTGGGCGGAATGTAGTGCTGCAGTACCGCCGCTCGCCTGCAGGCGCCGCCAAACCTACACAAATCACACAGCACTCCTCCGCTACTATGGCACTATTATGTAACACACTATGTCTATACATGTACATCTATACATCTCTATTTatctatacctctctctctctctctctctctctatatatatatatatatatatatattgtccgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaacatttaattttgtgctggaaaactaatgtttggaatctaaaaaggttttgtactgaatcaataatgctTTTTAGAAGTACTAAAAAAAGTAGgatgccaagacttttgcacagtactgtatttata

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224188 True 1204 lncRNA 0.40 2 1904862 1906435

Neighbor

gene id symbol gene type direction distance location
oplah oplah coding downstream 866 1888816 ~ 1903996 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 82048 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 100748 1776804 ~ 1804114 (-)
LOC117598490 NA coding downstream 254315 1622680 ~ 1650547 (-)
LOC113535205 NA coding downstream 285448 1613996 ~ 1619414 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 35261 1941696 ~ 1982877 (-)
LOC113535332 LOC108274177 coding upstream 146349 2052784 ~ 2078967 (-)
buc2l LOC108273451 coding upstream 212767 2119202 ~ 2123272 (-)
LOC113534974 LOC108273474 coding upstream 218300 2124735 ~ 2132242 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 259991 2166426 ~ 2171691 (-)
G189381 NA non-coding downstream 16992 1887584 ~ 1887870 (-)
G189354 NA non-coding downstream 79914 1824282 ~ 1824948 (-)
G189233 NA non-coding downstream 197156 1707364 ~ 1707706 (-)
LOC117598583 NA non-coding downstream 203429 1701050 ~ 1701433 (-)
G189200 NA non-coding downstream 302613 1570108 ~ 1602249 (-)
G189386 NA non-coding upstream 13035 1919470 ~ 1923367 (-)
G189388 NA non-coding upstream 17591 1924026 ~ 1925701 (-)
G189411 NA non-coding upstream 80900 1987335 ~ 1988231 (-)
G189412 NA non-coding upstream 83084 1989519 ~ 1990155 (-)
G189451 NA non-coding upstream 142395 2048830 ~ 2061265 (-)
ppp1r16a ppp1r16a other downstream 34869 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 131342 1760834 ~ 1773520 (-)
G189199 NA other downstream 333789 1568286 ~ 1571073 (-)
G189180 NA other downstream 339602 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1070102 748738 ~ 834760 (-)
LOC113547489 NA other upstream 287909 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 684802 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 879646 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 886611 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 945620 2852055 ~ 2855493 (-)

Expression


Co-expression Network