G189386


Basic Information

Item Value
gene id G189386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1919470 ~ 1923367 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224190
GCCTTTACTAGGACattattgtgtattaaaaatgatattaaagaATTACGCAAAAGGGcatgattgattaattaaagaataataattaataaaacacgtaataaacaaaaatcagCATGAAGGTCACTCTCCAGCTTgatatggcttttttttttatgaaactaaacacaaaaatatcagCAACAAATGAGTAAAGGGTGGAATTAGATAAACGCGTAATAAAAGATttaagagacacacacaggttgTCGGGTCCGTTACACACTCGTGAGGTAATGGTTAAAGTTTGGGCACTAAGGAAATTTCTAGATTTTCTTAGTGATCCTGATCACACAGGTCAAGATGTTGTTGGggtaaaagttaaaaatgttaaagaaggcatcactggaaaaaaatatatatatacatatatatatataaagaaatataaggCAAGAAAAACGGGTTCAGGTCCTTTATGATCAGAGGTAGTGAGAATTCAGACAAGTCTCCATCCTAATATTTAGCAaatctaaagtgtgtgtgtacacacacacacacagtagctgGTTTAAGGAATCGTTCTGCTCTAACTTCCTGTTTCGGCACTTCTCGGGTTTGAAAGGCATTCGATCCGCCAGACGTCACGTCTCAACTAAGGCACGGAAAGAGCGAAACAGTCCACAGTAAGACCAACGCTAATCATGCTAATTATTGGTCCGGTATTGTGGACGCTAGCGTTTTGACTCTTTTGAAATTTTGCGATTTATGCTGTTAGGCTACAAAGAAgcatttgaaaatatatttctagGCAAAGTGAACTTGAAATGGgataggaatttttttttttagttgataACTGTGATTCGAAGCTATTTTAGCTATTCGTAGCTATTCGTAGCTATAATATTATGACTACTTCACATTACTACAACGATTAAGCCGACTTTGCCCCTTTGGACCGTATTCAGAGTTTACTTTCATTAAGTTGTTGCGCACAAGTGATTGTCTGAGCAcgatgtaaaaataataataacaataataataataataatggtctgtgctggatcaagtgctattctatgcgCTGCAGAATagtgagtgtggaagccattttgttaaattaaactagTGACTCATCTCAGAATTACGACTAACACTACTCATGCAGCGATATATTGGCGACATACTCGtctcctattagatttatttcaactttCACCATCTTCTCACTCATATATTATAattagtgttttttgttttttttttttaaattctctcttGCGTTtatgtcacatacatattacgtTTGACAGcgaaggaagaaaaaaaaaaaaaaacgtattgcATTCTTCTGTCCCTGATTTATTCGGAgctttaaaggcaagtgcttgtttTTCGgcgtgaactttccctgcgTGAAATCGCCGACTCTGAATCCGGCCCACTGTtacaagggtgagtcaaatgaaaacctcaAACTACAATttaatcgtttttttttttgtttgtttgtttttttgaggaATCCAGACACTCGTTAAGTGCTGGAACACGTGCGCTGAACGAAATGGAGAGTACGCAGAAAAATTACAGACTTTCTGACACCTACTTGTAATAAACGAGTCGCGAAATGAGTTGAATCACATGATCAGTGCGATATTTCATAAATGTTGAATAGCTGTAGCTTTCTAAATGATTCTGGTATCTGCGATTAGAAATGTGGGATTTAACTGACGTGTTAATCAGCGCTCAGACCGAAGAATTTGTTTCGTGAAAAAGAGCTAGCAAACGATGCGGAAAAGCAATTCAGAGGACATTCGTGAACTAGCTTGAGCTAACAAGAAGGTGGAgctacactctctctctctctttttttaaatacaggaaCACCAGATTTTTGACGCGCCATTCCTCCTAATCTCACTCGACTCTCACAGTTCTcgaaaacccaaaaaaaaaaatggtttagctaagtagctaatattagctattCAGTGATCAACTACTGATTTTTGTGAGTGCTGTATTACGTTCCAGCGCTATCGTACCTGTCACTTTTCCAACACTTTTCTCAGCTGATCTTTAATTTCAAGAAGACATTCTTTAAAACTTGATAAATGTGTTTCTCAACTGAGTACAAGTTCCTGTTAGCTTTCAATAACTGATGACCTAGATTGGGCCCAAAATGttcagcattagcattagctttaAGGGCTGGTTAATTCATCATGCCCCATGTATATCTTCCGCTGTATACggtatttaatataaaatattttcgtAATTCCTCTCTCCCATTTTAATCCTGGTTGGTTAGCGAGCAAAACAGATACAATGGATTCAGCAATTATTCAGagccccttcattttttttcacattttatcttGCAgctttatgctaaaatgctttaaattatttttttttcacatcaatatacactccataccccataatgacaaagcaataaccagatttgtgataactctgcaaatttattaaaaagaaaaaaaactgaaattgacataagtattcagatcCCTAACTCACTACTCGATGCAATGAGCCTTGCACACCTTGATTTGGGGATCTTCTGCCATTCTTCTCTTCGGATCCTTTCAAGCTCTGTCAGGTTGGACGGGGACCATCAGTGGACAACCATTTTTCTCTTCAGAGGTCTCTCCTGAGATGTTCAATTGGATTCaagtctgggctctggctgggccactcaagaACATCCACAGAGTTGTCCCTAAGCCACTCTTGCGTTGTCTTGGCTGCGTGCTTAGGGTCATCGTCCTGTTTGAAGGTGAACCTTCAGCCCAGTCTGAGGTCCAGGTTTTCTTTAAGGATATCTCTGTATTTTGCTGAGATTCAGCTTTCCTTCTACCCTGACCAGTGCCCCAGTCCCTGCTGCTGAAAATcacccccaaagcatgatgccgccaccaccatgcttcactgttgggATGATATTGGGCAGGTGATGAGCGTTGCCTGGGTTCATCCAGACACGACGCTTGGAATTGAGCCCCAACAGTTCAATCTTCGTTTCATTAGACCAGAGAATCTTGTCTCTCACAGTCTGAGCAAATTCCAAGCGggctttcatgtgtcttggacaGAGGAGAGACTTATATCTGGCCACTCAGCCATAAAGACCAGATCGGTCTTGGCTGTTtgcttagggtcattgtcctgttggaaggtaAACCTTCAGCCAAGTCTGAGGTCTTGAGCGCTCTGGAACAGCTTTTCATTAAGGATATCTCTGTATTTTGCTGCATTCAGCTTTCATTCTACAGTGATGCAGTTCCTTCTGCAGTGATGGTTGACCTACACGTTTCTTCCATTtccacacatgatctctggagctcaatCAGAGTGACCACCAGGTTCTTTgtcacctctcttaccaaggTGCTTCTCCCCAGGCAGCCAGCTCTAGGAAAAGTCCTGGtttcttccatttaagaattatggaggcagctgtgctcttgggaaccttcaaagcagcagaaatttttttgtagccttcccTACAAGCCCTTCCCTACTAGTCTTTTGTAGGCAGTTCCTTTGgcctcatggcttggtttttacACTGatatgctttttcatttttcagctgTTGGACCTTGTGTgactttccaaatcatgtccaatcagctGAATTTGCCACAGATGGACTccaatcaaagtgtagaaacatctcagagatgatccagagacatgggatgcacctgagctaaatttcaagtgtcatagcaaagggtctgaatacttacgtcaatgtgatatttcagttttttctgattaataaatttgcaaagttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224190 True 3816 lncRNA 0.39 3 1919470 1923367

Neighbor

gene id symbol gene type direction distance location
oplah oplah coding downstream 15474 1888816 ~ 1903996 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 96656 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 115356 1776804 ~ 1804114 (-)
LOC117598490 NA coding downstream 268923 1622680 ~ 1650547 (-)
LOC113535205 NA coding downstream 300056 1613996 ~ 1619414 (-)
kcnh4b LOC108273803,LOC103352817 coding upstream 18329 1941696 ~ 1982877 (-)
LOC113535332 LOC108274177 coding upstream 129417 2052784 ~ 2078967 (-)
buc2l LOC108273451 coding upstream 195835 2119202 ~ 2123272 (-)
LOC113534974 LOC108273474 coding upstream 201368 2124735 ~ 2132242 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 243059 2166426 ~ 2171691 (-)
G189385 NA non-coding downstream 13035 1904862 ~ 1906435 (-)
G189381 NA non-coding downstream 31600 1887584 ~ 1887870 (-)
G189354 NA non-coding downstream 94522 1824282 ~ 1824948 (-)
G189233 NA non-coding downstream 211764 1707364 ~ 1707706 (-)
LOC117598583 NA non-coding downstream 218037 1701050 ~ 1701433 (-)
G189388 NA non-coding upstream 659 1924026 ~ 1925701 (-)
G189411 NA non-coding upstream 63968 1987335 ~ 1988231 (-)
G189412 NA non-coding upstream 66152 1989519 ~ 1990155 (-)
G189451 NA non-coding upstream 125463 2048830 ~ 2061265 (-)
G189512 NA non-coding upstream 223345 2146712 ~ 2146915 (-)
ppp1r16a ppp1r16a other downstream 49477 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 145950 1760834 ~ 1773520 (-)
G189199 NA other downstream 348397 1568286 ~ 1571073 (-)
G189180 NA other downstream 354210 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1084710 748738 ~ 834760 (-)
LOC113547489 NA other upstream 270977 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 667870 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 862714 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 869679 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 928688 2852055 ~ 2855493 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004506 LO017821.1 coding NC_007123.7 CM002896.2 5775853 ~ 5810279 (+)
tiger barb (Puntius tetrazona) G172784 adh8a,LOC107666441,LOC107747568,LOC107695031,LOC107733735,LOC107585225,LOC108263479 non-coding NW_025047686.1 JAEQBD010000031.1 553764 ~ 687206 (+)