G189451


Basic Information

Item Value
gene id G189451
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2048830 ~ 2061265 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224262
CCTTCCTAAATCCTGATTTACAGCACCAGTGCCTATAAAATGACCTTGACAGATTTCTGATGCGTTTGTAGGGTTTATTTATAATAGCTGTGTCTCATAATTGATGCAttaagtttataaaaaaaaacacaaatatttaatttaaaataatggtAGGAACCAAAAAAAGACAGGAGGCTGCGCCCAATTCGGCAGAGTCCACTTCATCTGTGTTCCCTTCGGCCATCTTGTAGAAAAGGGATGCAGTCCACATCTCTGTAGACTCCAGAAGCACATTTACCCAGAAACCACTGCTACATTCTGACTTTAGCTTGCTGCTGAAGCTAAGTGCATTCCTTCCGCTCCTCAGATGTGCAGGAACAGTGattattacactgtgtgtgtgtgtgtgtgtgtctggaaAAGTCGATCTTGAACGTTGTCGGTTATCGTGCGATACCCCGTCCTTCTTTACTTGCGAGCGTCCTCGGCATCGTCGCTCTCGCGCTCTtgccgctctctctctctcctcatctcctTCAGCTCCTGGCGGTACTTCCGCTCGATGAAGCGCTTCTGATGGGCCATCT
>TU224263
cacgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtCTGTGTCTCATAATTGATGCAttaagtttataaaaaaaaacacaaatatttaatttaaaataatggtAGGAACCAAAAAAAGACAGGAGGCTGCGCCCAATTCGGCAGAGTCCACTTCATCTGTGTTCCCTTCGGCCATCTTGTAGAAAAGGGATGCAGTCCACATCTCTGTAGACTCCAGAAGCACATTTACCCAGAAACCACTGCTACATTCTGACTTTAGCTTGCTGCTGAAGCTAAGTGCATTCCTTCCGCTCCTCAGATGTGCAGGAACAGTGattattacactgtgtgtgtgtgtgtgtgtgtctggaaAAGTCGATCTTGAACGTTGTCGGTTATCGTGCGATACCCCGTCCTTCTTTACTTGCGAGCGTCCTCGGCATCGTCGCTCTCGCGCTCTtgccgctctctctctctcctcatctcctTCAGCTCCTGGCGGTACTTCCGCTCGATGAAGCGCTTCTGATGGGCCATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224262 True 569 lncRNA 0.46 2 2048830 2049418
TU224263 False 519 lncRNA 0.47 3 2048830 2061265

Neighbor

gene id symbol gene type direction distance location
kcnh4b LOC108273803,LOC103352817 coding downstream 65953 1941696 ~ 1982877 (-)
oplah oplah coding downstream 144834 1888816 ~ 1903996 (-)
si:ch211-217a12.1 si:ch211-217a12.1,LOC108273807,LOC108431403,LOC107674759 coding downstream 226016 1812567 ~ 1822814 (-)
LOC113535291 LOC108273550 coding downstream 244716 1776804 ~ 1804114 (-)
LOC117598490 NA coding downstream 398283 1622680 ~ 1650547 (-)
buc2l LOC108273451 coding upstream 57937 2119202 ~ 2123272 (-)
LOC113534974 LOC108273474 coding upstream 63470 2124735 ~ 2132242 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 105161 2166426 ~ 2171691 (-)
emc9 emc9 coding upstream 154136 2215401 ~ 2224300 (-)
LOC117598663 NA coding upstream 182610 2243875 ~ 2245715 (-)
G189412 NA non-coding downstream 58675 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 60599 1987335 ~ 1988231 (-)
G189388 NA non-coding downstream 123129 1924026 ~ 1925701 (-)
G189386 NA non-coding downstream 125463 1919470 ~ 1923367 (-)
G189385 NA non-coding downstream 142395 1904862 ~ 1906435 (-)
G189512 NA non-coding upstream 85447 2146712 ~ 2146915 (-)
G189521 NA non-coding upstream 99365 2160630 ~ 2162571 (-)
G189547 NA non-coding upstream 219281 2280546 ~ 2280753 (-)
G189702 NA non-coding upstream 332761 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 541928 2603193 ~ 2604096 (-)
ppp1r16a ppp1r16a other downstream 178837 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 275310 1760834 ~ 1773520 (-)
G189199 NA other downstream 477757 1568286 ~ 1571073 (-)
G189180 NA other downstream 483570 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1214070 748738 ~ 834760 (-)
LOC113547489 NA other upstream 133079 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 529972 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 724816 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 731781 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 790790 2852055 ~ 2855493 (-)

Expression


Co-expression Network