G189477


Basic Information

Item Value
gene id G189477
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2143152 ~ 2145756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224296
taaaggacattaaaaaaaaaaaaaaagagaaaaaacattaGCTTTGTTTACATGCAGAGCAAATTgcgtttaaggtctatattcgggttgcagccattttccgaatacgatgtttatacgcgtacaggcatcggaatattcctgtatacatggtttgGTTGTTGTAAGTTGGCATTCCTAAATAACCAGCCTACAGCTacgcatctgttagcacccacaattccttgcggactgagctgcgcatatatctcctttcagtggctTTTCTGATTAAGGCGTTTACATGCAGCACATCTCTGATTAattattgtcttaatctgaatcgggaaATCGGATTGCGGTGTTTACGTGTGCGGTgtttactcaatattaatttagTATATCgccaaattccgattaatatcggagtattgatgtgcatgtaaacgtagtcgttgtttgcactatttgctatagatggcgctgttactatttttgcacaacgTAAGTGAACCGTTCTTTCTCGACAGCGTAAACAGGGACCGCGTCTTTCGTGACGTGAAACGTCACCGCACCTGAGAAGTCAGCTTGGGGTGTTCTTCTCAAATCCGAGTTCGTCAcgtcaacatggctgctcacagcatcagaaataaacacagaaaaacgtcttccctttaaatgagttatacggTATTTACAGGTATTAGCTTTCGATTAATCAACTTGCAGAAGTATTCGTTTGTtgaatctaaaacactgactgtgTAGTTCGCTGttggagaaagaaaatatacgTCGCTCATCCGAGTTAGCTGCCTGGCCAACAGAATACGAACATGAGGGCGTCAGTTTTCCCAGAATGCCGTAATTGTGACCGGCGAATTACCGCTTACGATGTAATGCAGCGTTTATTTTACATGAACTTGCTCATCTGACTTTTGAAACCAattccatctctctctgaagtgatatttgaacATGTCTTTGCTACGAAAATCGCCCAGCACTAGTTGACAGAATCACATGTTTAAAAGTTCAGAGAGATTGTTAAACTTGATTTTGTGCAATGAGGTCACACTTGTAGATGGCGTCTGGCCATGTTTAGTGACTAAAAGTACCAGGTTCTCCAGCAGCGGCCTGAAAACTGACTTGTGTTCCAGCAAAGCCATGTAACATTACGTAGCTAGCCAGTTTCTCTGGCATGCAAGCTAACACTAAGCTAATATTTTGTGGAATTAAATGCTAGGCACAATGTCTAACTGACAAGCTGAAAAGCTAGTGGTGATGTCACTTTGAGTTCAGTTTAAGTCTTGCCCCTCTTCACGCAAGGTAAACCTGTCACTTGGCCAAATCGGGATTTGCTAAGTGTTGGTAAAGTAAGCGTTATGAAGCGTAATAAACATGACATGTTCTGGCTTTGCTGATGGATGCGTCCCAAACCAGCAGCATAGCAGAACAGTGCACACTCTGACACCTGTGTATCTGCTCCGATCTGGTTTAGTATCCTCCGAGCGACATTTTACCAGCTTTATTCAGAATCTGGGTTAAACCTACCATTAATTTGCGAGTGATGATGACCCCTTGCTagcctttacattttttacacagcagtttacaaacatataaaccctgtttttcctttttgatAAGTGATGAAGACTGCATTGATTAAGCCTTTACAATTTAAATCATTGCATTGATCCTAATCTGTTTTGACGCACCATTAAGTAAAGCGGGATACAGTTTGGGATACAACCCTAAAGCTAAAAATCTTACCTGCTAGATGACTAAGCCCAGGAAGTAAACATGAGTCCCACTGATCGTCATGGTAACCGAAAGGCTAATCTGCCTAGCTAGCTGGATGGCCAGCATCTGTAACCAAGGTACAGTGGCGCTTTGCGGTTGCTGGTTGGCTGAAAACTAGCTTTGAAAATGTTATGTGCTTATAGTGGCGAATAGTTTTGAGGCAaagtttgggacgcagcccatGTCCGAGTCGTCAAGGTGTCCAGGaaagctttttgtttgtttgtttgctaaaCACTCACCTAGCTAACACGTTTGGTGTTGTagtttttttgttacattattCAATATGGTGCCAGTttggtggtttgggacacagcccatGACGTGACACCTGGTTTGGGACGCGACCCACGTCTGAGACGTCAGCCCAAAAACACTTTTTGCCAAACACTTAGCTGTCTTCACTTTGACATTATTTAGTATGAGGGcttgtggtttgggacgcagcccatGAATGTGGCAAGTTGTCATTAGTGAAATGTGACACCTCGTTTGGGACGAAGCCCACGAAGTCCTTTCCAGAATATTCTGCAGTGCAGCAGTTGATggaaacacacatttctgtaaGATAACTGTTACCATAGTGTTCGAGAGcgatcgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtttgtgtgtgttttgggggggGTTTCATGGTTTTGTTATCAGAGCCTTTGCCACTATAACAGagggattatgggtaatgtgGGGTTTAACTGGTTACTGAGTGTGATGATGTAGAGTTCCGACATACACTCAGCCTGTCCCTCAGCActgtactgcacacacacctttaatttattattaaacaccT

Function

GO:

id name namespace
GO:0060249 anatomical structure homeostasis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224296 True 2605 lncRNA 0.42 1 2143152 2145756

Neighbor

gene id symbol gene type direction distance location
kbtbd2 kbtbd2 coding upstream 200 2135179 ~ 2142952 (+)
LOC113535349 LOC108273450 coding upstream 26043 2104325 ~ 2117109 (+)
drosha drosha,rnasen,LOC107556767 coding upstream 93794 1992417 ~ 2049358 (+)
LOC113535328 rab5c,LOC108274320,LOC103035226,LOC108431395 coding upstream 151762 1986520 ~ 1991390 (+)
ghdc ghdc coding upstream 207411 1926399 ~ 1935741 (+)
avl9 avl9 coding downstream 2140 2147896 ~ 2162573 (+)
lsm5 lsm5 coding downstream 17418 2163174 ~ 2165781 (+)
irf9 irf9 coding downstream 27783 2173539 ~ 2184198 (+)
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding downstream 124876 2270632 ~ 2287054 (+)
LOC113547531 NA coding downstream 156477 2302233 ~ 2304287 (+)
LOC117598584 NA non-coding upstream 217448 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 255282 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 279500 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 366720 1775605 ~ 1776432 (+)
G189190 NA non-coding upstream 530932 1609826 ~ 1612220 (+)
G189555 NA non-coding downstream 149330 2295086 ~ 2295305 (+)
G189563 NA non-coding downstream 162470 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 171562 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 445482 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 460127 2605883 ~ 2608078 (+)
LOC117598558 NA other upstream 190928 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 477339 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1168934 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1358161 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 1920733 137521 ~ 222419 (+)
pyyb NA other downstream 379300 2525056 ~ 2528820 (+)
G189864 NA other downstream 614937 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 824369 2970125 ~ 3021609 (+)
G190028 NA other downstream 1092688 3238444 ~ 3239216 (+)
G190212 NA other downstream 1255511 3401267 ~ 3405009 (+)

Expression


Co-expression Network