G189521


Basic Information

Item Value
gene id G189521
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2160630 ~ 2162571 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224340
TAATTCTTTCCAATTTATTAAgactaaaaactaaaataactgAAGGTGCATCAAAGGAACATGTAAAACAATGctgaaattgaaaataaaaacaaagacacGGCAAAATCCActcaaacaattaaaaaaaaaaaacctctaaacaAATGAAACCactctttaaaaacaaattgtacAGCTAAGCGGATGGAGCATGTGGATGTACATCGTAAAAATCAAGTAAACAGATCAGAAGGATGAAACCCAACAGTCCCAGATCACGATCAGGGCGTCCCAGGGTCAACAGTGGTGGAGCTCGACTTGCGCtggagcagccaatcaggacgCAGAACAGCTACACAGCACATTAACGGTAGATAACATTAGCGCAGGGCTACGGTAACTGGTTAGTGAACTCCTagtggtgatgtcacatgatcagaTTTGACTTAAGCTCCACCCTTGGaccatttttaaatgaacagttAAATCTCATGGCTAATGGCCCACTCACATGCCAAGCTACATGCTAGCAGTCGTTACACTGCGGCTACGTAAGCAGGCCCTGTACGCTACAGCGTGAAGAGAGGGCACTTCGAAGAACGCACTTCTGTGAGTGATTTGGAGATTCTGGGACGCCGGAAAGTGGTGTAGTGACGGGAGCTTCCACTCGTGCACGCTCCACACCTTTATTCCAACGAAACACACTGTAAATCAGCCGCATGACAGCGAGTCTATCTCAGGGGTTTaatgtctgtagtgtgtgagggAGAAAGCTAACACTAGTGACGCGGACAGCTTACTGACAAAGTTGATCAATGCACGGGATTAATCATCACTTCCTGTTACAGGTGTTGCGACTACTAATCTGCTAGATATATCagttcatgtatttatttcttttgtgaatataatttaatatattattctgTTATCTTAATATATGCAGCATTTCTGATTGGACAAATTTGACACCAGATTTTGACTCCAGACAGACAGCCATGATAGAtggagtgaaagaaagaaaggaacagaaaaTGGATGCATCGATACAGATATTGGTATCAGGTATCGGTCCGAcactgtgctcatttactcCTACTCGTAAAAATGCTCCAATACCGACATCCGAGACCATGTGACACTGTGGGACGTTAAGTCTAGTGTAGGTTGTTGCACTAAGGATGCATTTCAAGCCGCCTGGTGAAACCGTTTAAACAGTATTCCTTGATAGAGCGTGCGAGGACCTCCGACCTCTGACCCGAGGACTGCGCTGTCTATTAAAGATACCGTTTAAACATCACAACATCTTAaccataaaactcagcatgaggagaataaacacagttaaattaaatgttctttgaCGTCTTTGACAGATTAATACTATAATAAGTACGTTACTCGTTTTATGATCAGTATCGGAATCGACGAGTACCGAAAAACCTGCACTCATACTCATACTTGGTCTGAAATAAAAGGTACTGATGCATCCGCATATAACaacagacagacagacagactgcgCACACTGGACAGGAGAATTAtatatatatatatgtatttgacATATTAAGTCCATCCCGAACTCACGCTGACAGACGTTAAGGCCGCTGATTTCAGGTAAACACACTCAGATCAGGGTGAGGCAGCGCTaaatgctgattggtcagacagtAAAGACACACCAGTAGGACGCGGTACACTGGAACAGTAGTGTGTTAGATCTAAGAGTACATGGAAGGAtgacggagtgtgtgtgtgtgtgtgtgtgtgaggagagaggCAGTCACTGCTTGGTCGTTGTAGACTGTGGGTTCGATATTAACGCTGGCGGAGAAAGTGTTGAGAACCACGATGACATCACCGACTTGGCGCTGTTCAAGGCTCCACCCACAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224340 True 1881 lncRNA 0.43 3 2160630 2162571

Neighbor

gene id symbol gene type direction distance location
LOC113534974 LOC108273474 coding downstream 28388 2124735 ~ 2132242 (-)
buc2l LOC108273451 coding downstream 37358 2119202 ~ 2123272 (-)
LOC113535332 LOC108274177 coding downstream 81663 2052784 ~ 2078967 (-)
kcnh4b LOC108273803,LOC103352817 coding downstream 177753 1941696 ~ 1982877 (-)
oplah oplah coding downstream 256634 1888816 ~ 1903996 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding upstream 3855 2166426 ~ 2171691 (-)
emc9 emc9 coding upstream 52830 2215401 ~ 2224300 (-)
LOC117598663 NA coding upstream 81304 2243875 ~ 2245715 (-)
LOC117598634 NA coding upstream 83223 2245794 ~ 2269055 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding upstream 145670 2308241 ~ 2334652 (-)
G189512 NA non-coding downstream 13715 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 99365 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 170475 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 172399 1987335 ~ 1988231 (-)
G189388 NA non-coding downstream 234929 1924026 ~ 1925701 (-)
G189547 NA non-coding upstream 117975 2280546 ~ 2280753 (-)
G189702 NA non-coding upstream 231455 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 440622 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 492732 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 532209 2694780 ~ 2701420 (-)
ppp1r16a ppp1r16a other downstream 290637 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 387110 1760834 ~ 1773520 (-)
G189199 NA other downstream 589557 1568286 ~ 1571073 (-)
G189180 NA other downstream 595370 1564890 ~ 1565260 (-)
c12h10orf88 c13h10orf88 other downstream 1325870 748738 ~ 834760 (-)
LOC113547489 NA other upstream 31773 2194344 ~ 2210979 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 428666 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 623510 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 630475 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 689484 2852055 ~ 2855493 (-)

Expression


Co-expression Network