G189547


Basic Information

Item Value
gene id G189547
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2280546 ~ 2280753 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224375
TCGCGCTCGTGACCGGAGCCTTGGAAAGTTCCCCTTTCACATCTTCACTTCATGAAGCGCAACACAAGGCGCGAGCGCGTCGCACAAACAGCGCGCGCGTGCGAGACCGAGAgagcgcgcgtgtgtgtgtgtgagtgcgtgtgtgtgtgtgtgagagagagagagagagagagagtgcagagCAGAACCGGCGGCACGCGCTCGTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224375 True 208 lncRNA 0.61 1 2280546 2280753

Neighbor

gene id symbol gene type direction distance location
LOC117598634 NA coding downstream 11491 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 34831 2243875 ~ 2245715 (-)
emc9 emc9 coding downstream 56246 2215401 ~ 2224300 (-)
psme2 psme2,LOC107556770,LOC107674582,LOC107716467,LOC107653260,LOC107727955 coding downstream 108855 2166426 ~ 2171691 (-)
LOC113534974 LOC108273474 coding downstream 148304 2124735 ~ 2132242 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding upstream 27488 2308241 ~ 2334652 (-)
samd14 NA coding upstream 54880 2335633 ~ 2345673 (-)
LOC113547524 gjd3 coding upstream 81071 2361824 ~ 2363285 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 303028 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 325280 2606033 ~ 2615766 (-)
G189521 NA non-coding downstream 117975 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 133631 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 219281 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 290391 1989519 ~ 1990155 (-)
G189411 NA non-coding downstream 292315 1987335 ~ 1988231 (-)
G189702 NA non-coding upstream 113273 2394026 ~ 2399476 (-)
G189717 NA non-coding upstream 322440 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 374550 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 414027 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 512074 2792827 ~ 2802964 (-)
LOC113547489 NA other downstream 69567 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 410553 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 507026 1760834 ~ 1773520 (-)
G189199 NA other downstream 709473 1568286 ~ 1571073 (-)
G189180 NA other downstream 715286 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 310484 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 505328 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 512293 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 571302 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2630981 4911734 ~ 4918977 (-)

Expression


Co-expression Network