G189555


Basic Information

Item Value
gene id G189555
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2295086 ~ 2295305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224386
agtgagtctgttccagaagcagccatgcaagcccaagccatgacactacctccaccgtgcttgaccagtgagctcatatgttttggatcatgagcagatcctttctttctccacactttggcctttccatcactttggtagaggttaatcttggtttcagaacttttgtggctcatttctgtatttctttgtgaattccaatctggatttctgattctta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224386 True 220 lncRNA 0.43 1 2295086 2295305

Neighbor

gene id symbol gene type direction distance location
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 8032 2270632 ~ 2287054 (+)
irf9 irf9 coding upstream 110888 2173539 ~ 2184198 (+)
lsm5 lsm5 coding upstream 129305 2163174 ~ 2165781 (+)
avl9 avl9 coding upstream 132513 2147896 ~ 2162573 (+)
kbtbd2 kbtbd2 coding upstream 152134 2135179 ~ 2142952 (+)
LOC113547531 NA coding downstream 6928 2302233 ~ 2304287 (+)
top2a top2a,LOC107598028,LOC107660475 coding downstream 51740 2347045 ~ 2361095 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding downstream 98771 2394076 ~ 2486796 (+)
mki67 NA coding downstream 194504 2489809 ~ 2502830 (+)
tut1 tut1 coding downstream 208089 2503394 ~ 2515254 (+)
G189477 NA non-coding upstream 149330 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 369382 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 407216 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 431434 1863202 ~ 1863652 (+)
G189245 NA non-coding upstream 518654 1775605 ~ 1776432 (+)
G189563 NA non-coding downstream 12921 2308226 ~ 2309418 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 22013 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 295933 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 310578 2605883 ~ 2608078 (+)
G189684 NA non-coding downstream 319392 2614697 ~ 2615755 (+)
LOC117598558 NA other upstream 342862 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 629273 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1320868 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1510095 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 2072667 137521 ~ 222419 (+)
pyyb NA other downstream 229751 2525056 ~ 2528820 (+)
G189864 NA other downstream 465388 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 674820 2970125 ~ 3021609 (+)
G190028 NA other downstream 943139 3238444 ~ 3239216 (+)
G190212 NA other downstream 1105962 3401267 ~ 3405009 (+)

Expression


Co-expression Network