G189563


Basic Information

Item Value
gene id G189563
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2308226 ~ 2309418 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224394
GGTTTATTGAGTATAAAAAAGTTCTATATACAAACATGAGTGCAtcattccatattttttttttttttttgatggtgaTAGTGGTAAGCATCAGATGATGCCTATCAAGCAAAGTAAGCTAAAACAAATGACATCGACATTCTTCAGAGGTGTCAGAAGAAGTACTTCAGAAGTGGAAGTGTAATGTTCAAATCAGGAGTAACTGTGAAGCCACAAGCTGTTAGGTTACTGGAAATCAGTATGGTTTGCATGGTGCTATCACGCAGTggctttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctataagGCGGCAATGGCTTTGGCAGCTACTCTTCGGCCCAGCGGGAGCGTCAGATCTGTGATGGACAGGACAACTTTGGGTTTGGCGAGCGCGTGCAGCTTGACCAGCTCAGAAacctgtgaaaacacacacacacacacacacacacacacacacacatatgaagaTCTTACATTACCACAGTAACTTCaggttgttgttgctgttgttgttgtagttctTTCGGCTGTTCCCGTTACAGGTCGtcacagcggatcactggtccgTGTGTTTGATTTGTCGCGGGTTTTACGCCGGACGTCCTTCCTGACGCAACTGTCCCATTTTATccggcttgggaccggcactgagagcgcactcccagtggctgggttccTCAGTAACTTGAGGCAACAAGACATATTTCGTCTCCCAGTTTTTATAATAATAGCTATTTGACATCATCATATCTATGTGAGGACCTTTGACACTGTTCTGTCGTTATGAGGACCTCTGACATCATCatatctttgtgaggacctcTGACATTGTTCtgtctttgtgaggacctttgACACTGTCCTATTATAAAGAACACATTTAACTCTACTCTATCActgtgaggacatttgacactgtcgGATCATTGTGAGGACTTCTGGTCCTTTTGGCTACAtaagtacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaccataGTGAAGGGCATGAACTGCAGGATGCTACCCCGGCTGCCCTGCTCcgaacactccacacactcctcGATGAAACTCTGCACGAACTGGGTGTGAGGGCCGGCGGTCTTCGAGCTCAAGATGGAGGAGATGAGCAAGAACAGATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224394 True 1173 lncRNA 0.46 2 2308226 2309418

Neighbor

gene id symbol gene type direction distance location
LOC113547531 NA coding upstream 3939 2302233 ~ 2304287 (+)
lrrc3ca lrrc3c,lrrc3ca,LOC107598050,LOC107716457,LOC107660473,LOC107678436 coding upstream 21172 2270632 ~ 2287054 (+)
irf9 irf9 coding upstream 124028 2173539 ~ 2184198 (+)
lsm5 lsm5 coding upstream 142445 2163174 ~ 2165781 (+)
avl9 avl9 coding upstream 145653 2147896 ~ 2162573 (+)
top2a top2a,LOC107598028,LOC107660475 coding downstream 37627 2347045 ~ 2361095 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding downstream 84658 2394076 ~ 2486796 (+)
mki67 NA coding downstream 180391 2489809 ~ 2502830 (+)
tut1 tut1 coding downstream 193976 2503394 ~ 2515254 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding downstream 221662 2531080 ~ 2574774 (+)
G189555 NA non-coding upstream 12921 2295086 ~ 2295305 (+)
G189477 NA non-coding upstream 162470 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 382522 1923984 ~ 1925704 (+)
G189293 NA non-coding upstream 420356 1887650 ~ 1887870 (+)
G189280 NA non-coding upstream 444574 1863202 ~ 1863652 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding downstream 7900 2317318 ~ 2318307 (+)
G189626 NA non-coding downstream 281820 2591238 ~ 2609497 (+)
G189678 NA non-coding downstream 296465 2605883 ~ 2608078 (+)
G189684 NA non-coding downstream 305279 2614697 ~ 2615755 (+)
LOC113547470 NA non-coding downstream 332423 2641841 ~ 2644184 (+)
LOC117598558 NA other upstream 356002 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 642413 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1334008 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1523235 725033 ~ 784991 (+)
ccser2b ccser2 other upstream 2085807 137521 ~ 222419 (+)
pyyb NA other downstream 215638 2525056 ~ 2528820 (+)
G189864 NA other downstream 451275 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 660707 2970125 ~ 3021609 (+)
G190028 NA other downstream 929026 3238444 ~ 3239216 (+)
G190212 NA other downstream 1091849 3401267 ~ 3405009 (+)

Expression


Co-expression Network