G189626


Basic Information

Item Value
gene id G189626
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2591238 ~ 2609497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224489
CCGAACATTTTAttgtacaaaagaaaaaaaaataatacaaaagagagctttaaaaagtataaaaagcaCAGATCACAAGTCAAAACCTACAAAATAGAACATGCTCTTTTTGCCAtataaaaatcaaaattttttcattcaacaggttaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatctgagTACATCATCTTAAAAACAATGGCACGTTTAATACAGGAAGTTATACTAACTGTAATAAAGTCACAGGCCAGAGTTTAAAAATACttgtaaaacaaacaactgttattaataataacaataataatagctgTTATGAAATTATAGGGATCGTTCTGGGcaaatttcaaatttacacacattttccacGCAGCTCAAACGTCAGCGATCAGCCAGAATGTGTAACTAATTAGTTAGCTTTAGCAGCTATCTATAGCTACTAAGATTTCTCATTGGAACGAAATAAAAAGACACTGGACCCACACCCACAAACAACGACGACAGCGGTCGGACATGGCCACAAGAGATAAACTACAAGCGTACATGGCGCTTGCGctacatatttattacatatttgtgGTTTACGTGACTACTTTGTCTATAGTTTGGAAACAAGTACCAACTAAATTCAATAAGCTAATTAAGGGTCGTTGTAcgctatttgtgtgtgttagctaaATATAGATAGCTATGTAGATTATTTCATCTCCTTGTACCTTTAGACtagatgaatataaaaatagctaAATATCTTGCTAGCTAGATAAACAtattctagctagctagctagatatttAGTTAGAGGAGATAAATATTACCTACATAAACTAAATAGTTTGCTAGTTCAACGTCAGGGAATTTgctagaagaaaaaaacaaaataaaaaacacccaAATCactaacatttaacatttgcaTGACGCGAATGACTGAAAATTTCAGGAAACATGTCTCAGCTGATCGACTTGCGTTTAAAGAAAATGTGGAAATTTGATTTTAGCTCAGATCGTCCCTTTAAGTGTCCATGTTCATATGATCATCTCTCCTCCTGAGTCGAAACGTTTCTACTTTTATATACGGAATGTAAGAAGCTGAAACCAGAGCAAATACACTTGAACTAAACACGCAGTATGGCTTTAATATTGGCGAGAAGCGCTGCCGTCGCTTGTTGTTACCAAGGCAACAAGCTGGTAAGCTCAACCCTGCTCAGGAGAAGCGTATTAAACGTAAACAACAGTAAATCTTAATAAACTTCCATTCATCATTTCCACGCTTTGGTTCATATGAACGAGAATACAGCTTAGACGGAGTGCTCAAGTCTGCGCTATGGATGGACGTCTTTAATTAAAGCGTTAGCTTGTAAGATACACAGTGCTGCGTAAGTTTTCACCCCCTGCCtcctttgaacttttccacattatgtagaactgaaatggatttatcTGGGATGATATGTCATGGATTTGTGAAGTTGTGAAAATTTTTGCTTGCTGTAAAACCCCTAAATGAGTCATGGGGGAACTTTGTGTGCAATTAAAATATCCTATGATCTcctatgaaaatataaatacgGTTTCTGGAGTTTTTCACATAAATATACAGCATCATAACGACCAAGgagctgccaaaacagctccaGGACAACGTTCTGGAAACGTATCAAGGgtttggttattaaaaaaataaaaaataaatcctatacTTCGAACAATTTTGTGAGGAAAtgcaacactgctcatcaccctgagaacaccatgaagcatggtggtggtagcatcatgtcgtggggatgcttttcatgAGCAGGGACGGCGAAACGGGTCATGGCTGAGGGCAAGAGGATGAATCCAAACAAAGGGCAACAATTTTTATCGTAGAATATTATGCAAACTATTTTGGTCCCACCCCCCTTcaatattatgattattttgtgtagatttatgaCACAATcctaattaagtccatttcGTTTCCAGGTTTTAACACGACgtaatgtggaaaagttcatcGGTGGGTGAGGCACTGCATTTCCACCGCCATCTACAGCATTGTCGGAAGACGCACACTTTATTAGACGAGcaaaaatgaaccaaaatgTGGGAACAATTGTATTAATTTCAAACTTGACATAGCAAACAAAGCTCAAACAAAGTAGCAGATTTCCTGACTCTGGTTTAGTACCACATTGAAACTAAAAGATTGTGCAtaaggaaaaaaacccaaaaaacttttaaatgtcCTCTCCAGGTTTCAGTACCGTTCTCTTTATCCAATCGCTGATCAAGGTTCAAGTCTCGATCTACCTAGCGCTCTTACGAGGGAGCTCGGAGGCAAAATCCAGCTCTCTGATTGGAATGATCAGGATTAGTAAATCTGGAACGTCATCTGATCTTGGATCAACGTCCGGAGAACAGGACTCGGACTTCCTCTTTACATTTAAGGCCATCTTACATCACTTAAAAATGGCTTACACTCCTACCTGCTGTTTATAAACACACGTCTGTGTTCTCTCACTGTTATGTCTGGCACAGTGATGCtagacacgcgcacacacacacacacacacacacacacacacacacacacacacacacactgtaaacactaccTTTTGGGTTAAGTCTCCTAAATAAGAGACACCTGTATAAAACTCCACCTTCCATTTTATCTCATTggcaaaaataagaaacaaggCAGTTATGGCTTAGAAACTTGTTCGAAACTTGTtccccaccccacacacacacacacacacacacatacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224489 True 2789 lncRNA 0.38 2 2591238 2609497

Neighbor

gene id symbol gene type direction distance location
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 16464 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 75984 2503394 ~ 2515254 (+)
mki67 NA coding upstream 88408 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 104442 2394076 ~ 2486796 (+)
top2a top2a,LOC107598028,LOC107660475 coding upstream 230143 2347045 ~ 2361095 (+)
ngfrb LOC108273578 coding downstream 47363 2656860 ~ 2697247 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 289392 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 296657 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 467596 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 484507 3094004 ~ 3099985 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 272931 2317318 ~ 2318307 (+)
G189563 NA non-coding upstream 281820 2308226 ~ 2309418 (+)
G189555 NA non-coding upstream 295933 2295086 ~ 2295305 (+)
G189477 NA non-coding upstream 445482 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 665534 1923984 ~ 1925704 (+)
G189684 NA non-coding downstream 5200 2614697 ~ 2615755 (+)
LOC113547470 NA non-coding downstream 32344 2641841 ~ 2644184 (+)
G189916 NA non-coding downstream 264658 2874155 ~ 2875297 (+)
G189933 NA non-coding downstream 315717 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 318304 2927801 ~ 2928169 (+)
pyyb NA other upstream 62418 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 639014 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 925425 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1617020 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1806247 725033 ~ 784991 (+)
G189864 NA other downstream 151196 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 360628 2970125 ~ 3021609 (+)
G190028 NA other downstream 628947 3238444 ~ 3239216 (+)
G190212 NA other downstream 791770 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 820816 3430313 ~ 3453426 (+)

Expression


Co-expression Network