G189678


Basic Information

Item Value
gene id G189678
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2605883 ~ 2608078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224549
GTAGCTCAAAATATTTCAGCTCATTTTCACACCCGAGTCCATCTGAACCATCACCAATggccataacacacacacacacacacagagcgtaTTGAGTCGTGTTTATTAGGTGTGTGACATGCCTGTAAGCATGTGGCTCATGGCCAGTGTAGCAGCATTTTCCCCAACGAGTCAAATATGTGTACAGTCACAACACAGCCAAGACATAATTCCTTTACACTGTAAACATCGATTACAcagagatgaagaaaaagaaaaaaaaaaagaaaaaaaaattggagaaACGTgagaattcattcattcgttctcGAAAGAGGAATATGTATGTGTTTCAAGTTGCCAGATATTGTCCATAATAGTCCAGTTTCTGGGAGAATAACATGATCATAATTGCTCATAGTTCAAGCACAATGTATAGAGTTCAGTCTTCTTGGTTCTgcacaaaaaaatgtgattaaacccccaaaaaagtgaaataagcAGCATTACGATGGATTTTGATCGCGCCTCTTCTCCAGCAGGAGTAGGAACGAAAGTACATCAGTAACTCTTCGTTCAGCTACTTCTGCCTGCTGGTGTCCTTCCGTCCTCCCTGAACTCTTCCTGCTGATCGTTAACGTCACGTTTACGTCCCGCTGAAGGTCGCAGCTACACGATCGACACAAGGACACTGATTTATTGTGCAaatattccagaaaaaaaaaaaaaaaacaaacaaacacgaCAACAGTTGTGTAAACTGAATGGAGAATCGACGCCGATTAGTTCCTCGCTGCGTCCTTATGGTGAACCACATGGCATTGTGGGTAGCTCTTGACGACGTTGCTGTGGAAACCCATCTCCTAGCAACAACTTCACTCTGGGCGCTGCTTAGGATCCAGCGAAGCTGAAGGACGAAGACAGATCTTTGGCTTTTAAAGAAAATctgtttttgtgttttagtgaTTTGGATCGTCTCGGAGAATTTGGATTCtgtggaggaaagaaaaaaaacaacttgcaatattcctttttttgtcAATTTTCTATGAagagaaatatattaaaaaggaTGCTATAGACTCGATTGATGACATCATACACGCTAcactagaagaaaaaaaaaaaaaaaaaaaaatgctagaaaaGCCAAAATCTCGTCTACAGTTCGAGAAATTATGGGCGTGACCGCAAAAAGAAAACTTACCGATAGAGCAGGAGGTTTGAAAGAACGTACAAATACCTTATCTGCCTTTCTCTTCTTGGCTGCAATGCAAAATAAGAGTTTTAGGGGAAACAAAAC

Function

NR:

description
PREDICTED: isoleucine--tRNA ligase, cytoplasmic

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224549 True 1282 lncRNA 0.40 3 2605883 2608078

Neighbor

gene id symbol gene type direction distance location
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 31109 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 90629 2503394 ~ 2515254 (+)
mki67 NA coding upstream 103053 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 119087 2394076 ~ 2486796 (+)
top2a top2a,LOC107598028,LOC107660475 coding upstream 244788 2347045 ~ 2361095 (+)
ngfrb LOC108273578 coding downstream 48782 2656860 ~ 2697247 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 290811 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 298076 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 469015 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 485926 3094004 ~ 3099985 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 287576 2317318 ~ 2318307 (+)
G189563 NA non-coding upstream 296465 2308226 ~ 2309418 (+)
G189555 NA non-coding upstream 310578 2295086 ~ 2295305 (+)
G189477 NA non-coding upstream 460127 2143152 ~ 2145756 (+)
LOC117598584 NA non-coding upstream 680179 1923984 ~ 1925704 (+)
G189684 NA non-coding downstream 6619 2614697 ~ 2615755 (+)
LOC113547470 NA non-coding downstream 33763 2641841 ~ 2644184 (+)
G189916 NA non-coding downstream 266077 2874155 ~ 2875297 (+)
G189933 NA non-coding downstream 317136 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 319723 2927801 ~ 2928169 (+)
pyyb NA other upstream 77063 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 653659 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 940070 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1631665 957532 ~ 974218 (+)
plekha1b plekha1,LOC107716481,LOC107660484 other upstream 1820892 725033 ~ 784991 (+)
G189864 NA other downstream 152615 2760693 ~ 2761010 (+)
LOC113547538 NA other downstream 362047 2970125 ~ 3021609 (+)
G190028 NA other downstream 630366 3238444 ~ 3239216 (+)
G190212 NA other downstream 793189 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 822235 3430313 ~ 3453426 (+)

Expression


Co-expression Network