G189702


Basic Information

Item Value
gene id G189702
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2394026 ~ 2399476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224575
TTATAGCCATGGACTCTTGATATGTGTAATGATACTGTAGTGTAACAGGGGCGAATTACAAAACCACGTCAGCACTTTCACAACAAATAAAAGGCCGAACAGCTTGTTCCAGTTGGGATGCTGATAGCGGGCAAAGGACATGAAGCCAAGAGCTGCAATGctccatcattattattatgattatggcCTATTTCTTCCCAAGTACACATATgggcttttctttttcaatttgaCCAGTAATGTAGAAGCTTTACGGGTTATTTCCTGAACTCCTGTTACCAAAAAGAAGCCTGAACCAGTGGCATCTGTTTTCTGCAGAGGACTTACTTTCTTCCAGTTTCACTTCAGTTAATAGTAACACAGCACCGGAAGAATTCCCATATCACGCCTTGTCTCAGTTCGGATTGTTGTCGAATCTGTGGCCGCTTCTTTCCCACAGATAAAGTCGAGTATCATGGCGTTGGAGCGGGAAGCACCTGAAGAGGCCACTTGGCAGCAGGGACCTCTTTTACTGTAAGCGCCTGTGAGAGTACTTCGCCAAATGTGTTGCAGAAAACGGCGCGCCCCCTTTAAGAGGCTGAAACGAGGCAGCTGAGTTATCCTATCTCTCTGACCTAGTTGCTCCCGCTCCCTCTCATCTCTCCATTCTTCATCTCGCTGGGATCTGTGCTGTCTGACACGTGAAAACTTTAATACCATCAAAGACGCAAGGAGAAATAGCCGAAAAGACGGATGGGTTGAGgggatataaaaagaaaagcctTCATCCCTTGCGATAGAGTCGAGTCCTGGTGTGGACTCACCAATGGCAGAAGAGCATCAGCATTCACAGAGCTTCCGCACTCGTCTCTCAGCACATCATAGGGGTTTAACTTCCCAATCCTGCCTTTCATTCACAATCTCTCTGCACTTTTCAGGCCTTTCCCACACTCCCCCTCTCCCCCGAGAGACGCTTCAGGGTGAATCACATGTTCCTGCGGCTAAACCAAACTGCCGCAACCTCGCTGTCCTGTGACCGCTGCATTAGCCACAATGTTCACTCGGAGAAACCTCCTCAGCTGCTGTGCTTGTCTCGAGGAATACAAGATGGATTACACCGACTATAATAAGTATTGCTCGAAGCTGTCCACGTGCAACCTACTTATCAACCATCTACTAATGACTCATAGCTTCTGTGATAACCATCTCAGAAAACAAATTATGTTGtgcaaattatgcaaaataATGGCTTATGTGTTTCCAGAATCTACTTCAACCTCCTCTGTGAAACTATTAGCATTGCAGCTGTAACTCTGCTAGATACTAAAAAGCGCCTCTGGCTCAGGGTTCTTGAAGTTTTCGCGGTGTGCTTGTGATTATATGGTTTATGGTGTCTACATGTTTCTGTAAACTTTGATAACCAGACAAAAAGATAAACACTGCTGATAAAGGCCTGTTGTATATACCCGCTCCTCAATATCTTCATGTATATTGTAATGAATTTACAATGTATGCACAAGGTCTTTCAGCTAAAATATGGGATTATTAAGATGAAATGCTCATGAATATCTTGAAAGACTCCCAATGTCATTTTACCAGGATTCAAATATAATTCTCTACTTTTTACAACCACACTGATTGTTGGGAATAACGACAACCAGTTATGAAACAAAGACTAAACATTCTGATCACTTCTCCAAGCAGGACAACGGAAGCTCTTTTTGGCAAACCAGGTTTTACGCCTCTGCATGCCACGGCTCGATTCCTCAGCCCTAATTTGTCCATGTGGTTTGGGCTAATCTGTTCGCCTCGCTTGGTCTGACCACATCAACACAAGGCCTGAACAAGTGGGAGGCTCCTGGCAGCTGCGTACCAGTCCAATAGCATGGCACATGGCTGAGTTCTCTCCAAAATCACAGCCTGCTTGCTTCAGAGCCAGACAGCCTCCAGAAACAGATTCCACAGTCTGATTCCAGATCTAATGCAATCTAAAAACAGTGTGTACTTCCAGAATCTGCTCCTGGAGCTAATATTTTGGAGAAACAATGCCTGATTTCTTCATTGCCAACATCACAGCCTTCCGGAGATGACGTTCTCCTAAAACAGAACCTGTCTCCAGAGCTAATGTCTCCAGAAACAGAACCTGTCTCCAGAGTTAACACTTTCCAGGAACAGAGCCCGCTTTAATTGGAGAGTCCAAACAGATTCCAAAAACAAGGCCTTTTTGCAGAGGTGAATATCCAGataatgcttaaaatgagcaacTTATATAAATGGAGCCTGTTCTCAAAGCTTAACAGCTTCTAGAAATAAAGCTATGACCCCCACAAACAGAGCCTGTTTCCATAATTAATGTCTTCCAGAAACAGACTCTGTTTCCTTCAATGCCAAAGACCCTTCAAAATCAAAGCCTGTTTGCTGAGTTTGCTGCTATCTTTAGAGCAGGTTTCCAAAAATAACATCCTCTAGAAACAGAATGTACTTCCTTTAGAGATGAACAACATCCAGATAAAGGACTAATGGTGTCTATGATCAAAGCCTGCTCTCAGAGTTAATAATCTCAAGAAACAAATCTGTTTCCAGAGCTAATTCTGTCCACAGCCTGCTTTCCTCGGAAGTGAGTCTTCCGGAAACCTACTTCCAGAGTAAAAGTGGTTTAAGAAACAGCATCTAACTCTAGAGTCTGATCTCCAAAAACAGAACCTGCATTCTTCAGAAATGCTTGTCTTCAAGCTTGCTCTCAGAGCTAAAGGGCCTTGAGAAACAGCACCTGACTTAGACCCAAACAACCTGCAGATACCAACCCCGCTTCCAGAGCTGCCATTGTCCAGAACCAGGGCTGGCTTTCTTCAGTTGTATGTCCTTCAGAACGAGAGCCTATTTGGTTCCTACAGAACCTAAACAACTTCTGGGAACTGCTTCCAGAGATAACAGCCTCTGGAAACAGAGCCTTAATTTCTTTGTTGATCTAAAGTGTAGAATTTGCAGGAAGTCAAGAGAATAATCAGGATTTTCAACACCCATTTGAAGAGTCCAGTCATCTTTACTAATTGGAAATGACCATCATGCTGAACTGTAACTTAGAGTAGAACTCTAACTCTATAGAGGATAGAGAGATCCTTTGAGACCCAGGATGTAGGGGTTTTTCAGGAAGACATCAGTAAGTTCTGCTGCAAACAATGTGTatagttgcaaaaaaaaaaaaaaaaagtataagaCAAGGAACAATTCATGCAAACAACCAATCCACAAATCCCTAACTGGTTTAACTTGTGCTTTAAATGTAGATCTGACAGTTTGACACCATCAGGACCCAGTTCGGTGACACAGCACTATGCTAAGCCCTGCAACAATAGCACCATTGTCACAATCACAATCCACTGCAttgtatggtttttttttgtacactcCACATTGACACACTCCGGTCCTCTACAAAACACTCTGAAAACGTCCAGTCCTCCTGCCGTCCTCTCCCAAAAAACATTCTGTTCCAAGGAtcatgtggggaaaaataagttaaataaacCATCAGAAACTCAGCggctgaaaaagaaataaataatttttgccAGGAGATGTTGAGTCACtatcacgttttttttttcttttgctttttccaTTCTGTGTTCTGGCATTCATCTTATAAGGAAGTGGAGAGAGGgaaaagggtttttttctggTGGAACTGGTGTGTCAGAAGAATTGATTGAGGTAGAACAGTGTAACATGAAAACACTTGTCAGCGTAAACAGTGATTAAGCGTGCTGTAATTGCGTAAACTACTATTTATATCAGtgctggattgtgattggtcagaaggtgttgattcattttctatatcagcagctctgacagtagtgcaggtttatatcaatgcgctcgtttaatatgttatcgtttctatacgCTCCACACAAacgaattttttaaaatcatcgatatggtgaagatgtctatttaaaatgtatggaaggagtctccagtgttaacGCTTTggatcagtcagaggtaaagctgtaacttttctgacatcttcaggacagaggagtttacgcgtTGCAGTTCCACCATACCAGCCTGTCAttagttattttcctatacaaGCACACCACGGAGTATATATAACATAACTCCATACTACGTTATTACGAGTTTAGTTAAAAAGTTAACTACGATGGCGTTGTGGTACCTACGTTCCAAGAGCATAATGTTAGCATAGTGACAGCATACTCTGTTACTAAGCTGGTAGCTAAAATGTCATTTCCGTGTTGAGCCATTATTGCCCTAAAGGCAGGTAATACTTACTCAGGTATAAGTATGTCATAATTGTTACCAAAACGACATTGCAATTTGTTACCAACCTGACaggttcattcattctttcatgcTAATGATGGTCTGTTAtcactttggttaacggtttacccacaatgctgtgctgacagtagtgcagtggAAATTAGCCCACGCTTCATCTCTagctaaagagagcgatgcagcggcgctttagtcctttagtcctCATCGAAACAGATCGTTCTGATACCTCTGTCAACGTCATTGCGCTGGTCATCTCGTAGctcgctaactagccaagccgCTTCAACGTacgctggatttctcatcaGTGTGATGCTGAACATCGCCGGTGCGTGACAGAAGACGCTCTTGCGAGCCAACGGTGAAACCTTATGTTTGTTATCATCGATGACATGATAATAACAATGTCCCCATGTGACGTCAGTGCAACACACTACccctaacttctcacaggaataacggGAAATGCATCAACATCCAGCACATGTGCAGCAGACTCATGAAACACATCAGAAAGATTGCAGTGGGAACGTGTTGAATGTGGTTCAGGGAGCAGTTTAACTTTAAAGAACATGTCAGGAGGAGAGGCGATGCTGAGCAGGATGACAGCTCCATCAGACACAAGCCGGAAGTTtcgagaagaagaagaagaagaagaagacggaGGAAAGAAAAACCTCATGAATACCTGTGAGCTGTAACCTGTTGGCTCCGCCCACCGGCGTCTCGCGACCGATCCGAGTTTCTCTCCGCGGCTCGGTTCTGACGCGGTGCGCTGTGAGGATGTTACTCCACGGTGTCGTGCCGCCGTTTctcgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtaaccctCCCCGTGCACAAGTGACCTCCAAATGGGAAACCGGAAAGCGGGCTCAGAAACGGCGCGCGCGTCGGACCGACTCGGACGGGGAGACGGGAAGCGGGAACGGAGCTCCGCGCGAGCCAGAGGAAGCGACAGCGGCCATTTGGAGTCACGTGCCTGCgtatgcaagtgtgtgtatgtctgtgtgtgtgtgtgtgtgtgtgtatgtatgtgttttgtgAAACCCGACGCGCGCGAATGACCCCGCCCCCCTCCCCTCTCCGTTTCCTCTCGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224575 True 5425 lncRNA 0.44 2 2394026 2399476

Neighbor

gene id symbol gene type direction distance location
LOC113547524 gjd3 coding downstream 30741 2361824 ~ 2363285 (-)
samd14 NA coding downstream 48353 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 59374 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 124971 2245794 ~ 2269055 (-)
LOC117598663 NA coding downstream 148311 2243875 ~ 2245715 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding upstream 184305 2583781 ~ 2590145 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 206557 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 218913 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 332740 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 456760 2856236 ~ 2864989 (-)
G189547 NA non-coding downstream 113273 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 231455 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 247111 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 332761 2048830 ~ 2061265 (-)
G189412 NA non-coding downstream 403871 1989519 ~ 1990155 (-)
G189717 NA non-coding upstream 203717 2603193 ~ 2604096 (-)
G189810 NA non-coding upstream 255827 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 295304 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 393351 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 397031 2796507 ~ 2827807 (-)
LOC113547489 NA other downstream 183047 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 524033 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 620506 1760834 ~ 1773520 (-)
G189199 NA other downstream 822953 1568286 ~ 1571073 (-)
G189180 NA other downstream 828766 1564890 ~ 1565260 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other upstream 191761 2591237 ~ 2609773 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 386605 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 393570 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 452579 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2512258 4911734 ~ 4918977 (-)

Expression


Co-expression Network