smarcd2 (smarcd2,LOC107569192,LOC107694073,LOC107684754)


Basic Information

Item Value
gene id smarcd2
gene name smarcd2,LOC107569192,LOC107694073,LOC107684754
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2591237 ~ 2609773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224592
ggactgcctgtgcaacctctgtagggtgcAGGTATCACttcatgctaccagtagtgacactgaccctagccaagtgcaaaagatgagtagggaaaaaaatgtcagtggcctccattcctgttttgggggtcgtgcacctgttgttaatttcattaacaccaaagcagctgaaattgattaacaaccccctctgctacttaactgaccagatcaatatcccaggagtttaattgacttgatgctatactctgattaaaaagtgttcctttaattttttgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtggggtggggaACAAGTTTCGAACAAGTTTCTAAGCCATAACTGccttgtttcttatttttgccAATGAGATAAAATGGAAGGTGGAGTTTTATACAGGTGTCTCTTATTTAGGAGACTTAACCCAAAAggtagtgtttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCATCACTGTGCCAGACATAACAGTGAGAGAACACAGACGTGTGTTTATAAACAGCAGGTAGGAGTGTAAGCCATTTTTAAGTGATGTAAGATGGCCTTAAATGTAAAGAGGAAGTCCGAGTCCTGTTCTCCGGACGTTGATCCAAGATCAGATGACGTTCCAGATTTACTAATCCTGATCATTCCAATCAGAGAGCTGGATTTTGCCTCCGAGCTCCCTCGTAAGAGCGCTAGGTAGATCGAGACTTGAACCTTGATCAGCGATTGGATAAAGAGAACGGTACTGAAACCTGGAGAGgacatttaaaagttttttgggtttttttccttaTGCACAATCTTTTAGTTTCAATGTGGTACTAAACCAGAGTCAGGAAATCTGCTACTTTGTTTGAGCTTTGTTTGCTATGTCAAGTTTGAAATTAATACAATTGTTCCCAcattttggttcatttttgCTCGTCTAATAAAGTGTGCGTCTTCCGACAATGCTGTAGATGGCGGTGGAAATGCAGTGCCTCACCCACCgatgaacttttccacattacGTCGTGTTAAAACCTGGAAACgaaatggacttaattaggATTGTGtcataaatctacacaaaataatcataatattgAAGGGGGGTGGGACCAAAATAGTTTGCATAATATTCTACGATAAAAATTGTTGCCCTTTGTTTGGATTCATCCTCTTGCCCTCAGCCATGACCCGTTTCGCCGTCCCTGCTcatgaaaagcatccccacgacatgatgctaccaccaccatgcttcatggtgttctcagggtgatgagcagtgttgcaTTTCCTCACAAAATTGTTCGAAgtataggatttattttttatttttttaataaccaaacCCTTGATACGTTTCCAGAACGTTGTCCtggagctgttttggcagctcCTTGGTCGTTATGATGCTGTATATTTATGTGAAAAACTCCAGAAACcgtatttatattttcataggAGATCATAGGATATTTTAATTGCACACAAAGTTCCCCCATGACTCATTTAGGGGTTTTACAGCAAGCAAAAATTTTCACAACTTCACAAATCCATGACATATCATCCCAgataaatccatttcagttctacataatgtggaaaagttcaaaggaGGCAGGGGGTGAAAACTTACGCAGCACTGTGTATCTTACAAGCTAACGCTTTAATTAAAGACGTCCATCCATAGCGCAGACTTGAGCACTCCGTCTAAGCTGTATTCTCGTTCATATGAACCAAAGCGTGGAAATGATGAATGGAAGTTTATTAAGATTTACTGTTGTTTACGTTTAATACGCTTCTCCTGAGCAGGGTTGAGCTTACCAGCTTGTTGCCTTGGTAACAACAAGCGACGGCAGCGCTTCTCGCCAATATTAAAGCCATACTGCGTGTTTAGTTCAAGTGTATTTGCTCTGGTTTCAGCTTCTTACATTCCGTATATAAAAGTAGAAACGTTTCGACTCAGGAGGAGAGATGATCATATGAACATGGACACTTAAAGGGACGATCTGAGCTAAAATCAAATTTCCACATTTTCTTTAAACGCAAGTCGATCAGCTGAGACATGTTTCCTGAAATTTTCAGTCATTCGCGTCAtgcaaatgttaaatgttagtGATTtgggtgttttttattttgtttttttcttctagcAAATTCCCTGACGTTGAACTAGCAAACTATTTAGTTTATGTAGGTAATATTTATCTCCTCTAACTaaatatctagctagctagctagaataTGTTTATCTAGCTAGCAAGATATTtagctatttttatattcatctaGTCTAAAGGTACAAGGAGATGAAATAATCTACATAGCTATCTATATttagctaacacacacaaatagcgTACAACGACCCTTAATTAGCTTATTGAATTTAGTTGGTACTTGTTTCCAAACTATAGACAAAGTAGTCACGTAAACcacaaatatgtaataaatatgtagCGCAAGCGCCATGTACGCTTGTAGTTTATCTCTTGTGGCCATGTCCGACCGCTGTCGTCGTTGTTTGTGGGTGTGGGTCCAGTGTCTTTTTATTTCGTTCCAATGAGAAATCTTAGTAGCTATAGATAGCTGCTAAAGCTAACTAATTAGTTACACATTCTGGCTGATCGCTGACGTTTGAGCTGCgtggaaaatgtgtgtaaatttgaaatttgCCCAGAACGATCCCTATAATTTCATAAcagctattattattgttattattaataacagttgtttgttttacaaGTATTTTTAAACTCTGGCCTGTGACTTTATTACAGTTAGTATAACTTCCTGTATTAAACGTGCCATTGTTTTTAAGATGATGTActcagatgattttttttttttttttttttttttttttaacctgttgaatgaaaaaattttgatttttataTGGCAAAAAGAGCATGTTCTATTTTGTAGGTTTTGACTTGTGATCTGtgctttttatactttttaaagctctcttttgtattatttttttttcttttgtacaaTAAAATGTTCGGC
>XM_034309571.1
TCCCTCCTGTCCGTAACATGCCCATGGGCGGAATGGGTTCCATGGGTTCTCCGATGTCCGGGCCGTCGTACGGTGGCACCATACCGCTTCGGCCCGGCATGCCCCAAACCGCGATGGACCCGGCGCGCAAGAGActcctgcagcagcagcagcaacagcagcagcagcagcagcatgcgGGGGGGATGATGGGACATCGGAGAGGGCTGAAACGACGCAAAATGGCCGACAAAGTTCTACCCCAGAGGATCCGGGATCTGGTTCCTGAGTCTCAGGCGTACATGGACCTTCTGGCGTTTGAGAGGAAGCTGGACCAGACCATCGCTCGCAAGCGCATGGAGATCCAGGAGGCCATCAAGAAGCCCATCACGCAAAAGCGTAAGCTGAGGATCTACATCTcaaacacctgcacacctgccAAACCTGAGGGGGAGGAGTCGGAGAAAGTGGCATCATGGGAGCTCAGAGTGGAGGGCAAACTCCTGGAGGATCCCGGGAAACAGAAGAGAAAGTTTTCCTCCTTCTTCAAAAGCCTGGTCATTGAGCTGGATAAGGAGCTTTATGGTCCAGACAACCACCTGGTGGAGTGGCACAGGATGCCCACCACTCAGGAGACGGACGGCTTTCAGGTGAAGCGGCCGGGAGACGTGAGTGTGAAGTGCacgctgctgctcatgctggaccaccagCCGCCGCAGTACAAACTGGACCCTCGGTTAGCGCGTCTCCTGGGCGTTCACACTCAGACCCGAGCCAGCATCATGCAGGCGCTCTGGCTCTACATCAAGAACAACAAGCTGCAGGACTGCCACGAGAAAGAGTACATCAACTGCAACCGCTACTTCAGACAGATCTTCGCCTGCCCCAGAATGAGGTTCTCCGAGATCCCCATGAAGCTGGCGGGACTCCTGCAGCACCCCGACCCCATCGTCATCAACCACGTCATCAGCGTGGACCCGAACGACCAGAAGAAGACGGCGTGCTTCGACATCGACGTAGAAGTGGACGATCCGCTGAAGAGCCAGATGAGCAGCTTCCTGTCCTCCACCACCAACCAGCAGGAAATCGCAGCCCTGgagatgaagATCCATGAGACCATCGAGTCAATAAACCAGCTGAAAACGCAGCGGGACTTCATGCTGAGCTTCAGCAACAACCCTCAGGACTTCATCCAGGACTGGCTCAAGTCTCAGAGCCGAGACCTCAAGctGATGACGGACACTGCCGGGAACccagaggaggagaggaggagtgagTTCTACCAGGCTCCCTGGATCCAGGAGGCCGTGGGCCGCTACATATTCTCCAAGGTCCAGCAGAGGAGACAGGAGCTGGAGCAGGTACTCGGTATCCGCCTCACCTAAACCCCAGAGGAAACGTTTTGGATGGATGCGTCGAATTCGAGATGCTGCAAGTCTTCAtattattatgcttttttttttgcttaagaTTTGACGTGAGATTTCCTCAGGTCACAGATTTGTCGCGATTGTAATTTTGTTTCATGtatgaaagcatttttttttctttattgttcaCATCCTAGTGTGTATTTGCCTTTTGTTTGGTATTGCATACCCAGTTtggaccgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtctaGCATCACTGTGCCAGACATAACAGTGAGAGAACACAGACGTGTGTTTATAAACAGCAGGTAGGAGTGTAAGCCATTTTTAAGTGATGTAAGATGGCCTTAAATGTAAAGAGGAAGTCCGAGTCCTGTTCTCCGGACGTTGATCCAAGATCAGATGACGTTCCAGATTTACTAATCCTGATCATTCCAATCAGAGAGCTGGATTTTGCCTCCGAGCTCCCTCGTAAGAGCGCTAGGTAGATCGAGACTTGAACCTTGATCAGCGATTGGATAAAGAGAACGGTACTGAAACCTGGAGAGgacatttaaaagttttttgggtttttttccttaTGCACAATCTTTTAGTTTCAATGTGGTACTAAACCAGAGTCAGGAAATCTGCTACTTTGTTTGAGCTTTGTTTGCTATGTCAAGTTTGAAATTAATACAATTGTTCCCAcattttggttcatttttgCTCGTCTAATAAAGTGTGCGTCTTCCGACAATGCTGTAGATGGCGGTGGAAATGCAGTGCCTCACCCACCgatgaacttttccacattacGTCGTGTTAAAACCTGGAAACgaaatggacttaattaggATTGTGtcataaatctacacaaaataatcataatattgAAGGGGGGTGGGACCAAAATAGTTTGCATAATATTCTACGATAAAAATTGTTGCCCTTTGTTTGGATTCATCCTCTTGCCCTCAGCCATGACCCGTTTCGCCGTCCCTGCTcatgaaaagcatccccacgacatgatgctaccaccaccatgcttcatggtgttctcagggtgatgagcagtgttgcaTTTCCTCACAAAATTGTTCGAAgtataggatttattttttatttttttaataaccaaacCCTTGATACGTTTCCAGAACGTTGTCCtggagctgttttggcagctcCTTGGTCGTTATGATGCTGTATATTTATGTGAAAAACTCCAGAAACcgtatttatattttcataggAGATCATAGGATATTTTAATTGCACACAAAGTTCCCCCATGACTCATTTAGGGGTTTTACAGCAAGCAAAAATTTTCACAACTTCACAAATCCATGACATATCATCCCAgataaatccatttcagttctacataatgtggaaaagttcaaaggaGGCAGGGGGTGAAAACTTACGCAGCACTGTGTATCTTACAAGCTAACGCTTTAATTAAAGACGTCCATCCATAGCGCAGACTTGAGCACTCCGTCTAAGCTGTATTCTCGTTCATATGAACCAAAGCGTGGAAATGATGAATGGAAGTTTATTAAGATTTACTGTTGTTTACGTTTAATACGCTTCTCCTGAGCAGGGTTGAGCTTACCAGCTTGTTGCCTTGGTAACAACAAGCGACGGCAGCGCTTCTCGCCAATATTAAAGCCATACTGCGTGTTTAGTTCAAGTGTATTTGCTCTGGTTTCAGCTTCTTACATTCCGTATATAAAAGTAGAAACGTTTCGACTCAGGAGGAGAGATGATCATATGAACATGGACACTTAAAGGGACGATCTGAGCTAAAATCAAATTTCCACATTTTCTTTAAACGCAAGTCGATCAGCTGAGACATGTTTCCTGAAATTTTCAGTCATTCGCGTCAtgcaaatgttaaatgttagtGATTtgggtgttttttattttgtttttttcttctagcAAATTCCCTGACGTTGAACTAGCAAACTATTTAGTTTATGTAGGTAATATTTATCTCCTCTAACTaaatatctagctagctagctagaataTGTTTATCTAGCTAGCAAGATATTtagctatttttatattcatctaGTCTAAAGGTACAAGGAGATGAAATAATCTACATAGCTATCTATATttagctaacacacacaaatagcgTACAACGACCCTTAATTAGCTTATTGAATTTAGTTGGTACTTGTTTCCAAACTATAGACAAAGTAGTCACGTAAACcacaaatatgtaataaatatgtagCGCAAGCGCCATGTACGCTTGTAGTTTATCTCTTGTGGCCATGTCCGACCGCTGTCGTCGTTGTTTGTGGGTGTGGGTCCAGTGTCTTTTTATTTCGTTCCAATGAGAAATCTTAGTAGCTATAGATAGCTGCTAAAGCTAACTAATTAGTTACACATTCTGGCTGATCGCTGACGTTTGAGCTGCgtggaaaatgtgtgtaaatttgaaatttgCCCAGAACGATCCCTATAATTTCATAAcagctattattattgttattattaataacagttgtttgttttacaaGTATTTTTAAACTCTGGCCTGTGACTTTATTACAGTTAGTATAACTTCCTGTATTAAACGTGCCATTGTTTTTAAGATGATGTActcagatgatt

Function

symbol description
smarcd2 Predicted to enable transcription coregulator activity. Acts upstream of or within hematopoietic progenitor cell differentiation and neutrophil differentiation. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2).

NR:

description
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
TU224592 False 3044 lncRNA 0.38 3 2591237 2609773
XM_034309571.1 True 4033 mRNA 0.45 14 2591412 2600533

Neighbor

gene id symbol gene type direction distance location
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 1092 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 227952 2361824 ~ 2363285 (-)
samd14 NA coding downstream 245564 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 256585 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 322182 2245794 ~ 2269055 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 8616 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 122443 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 246463 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 264743 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 314822 2924595 ~ 2952904 (-)
G189702 NA non-coding downstream 191761 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 310484 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 428666 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 444322 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 529972 2048830 ~ 2061265 (-)
G189810 NA non-coding upstream 45530 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 85007 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 183054 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 186734 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 301239 2911012 ~ 2911255 (-)
LOC113547489 NA other downstream 380258 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 721244 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 817717 1760834 ~ 1773520 (-)
G189199 NA other downstream 1020164 1568286 ~ 1571073 (-)
G189180 NA other downstream 1025977 1564890 ~ 1565260 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 176308 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 183273 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 242282 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2301961 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2339390 4949163 ~ 4952859 (-)

Expression


Co-expression Network