G189717


Basic Information

Item Value
gene id G189717
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2603193 ~ 2604096 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224598
GAAACTCTTAAAAACGGCTCTTACGAACCAACCATTGCGACAGAAAGCAGGGGGGAGGCGGTTTGACAAGACACTTCATGGAAAGAAGAGATGACACTCAGAGATCGCGGAGTGCTTTCGAAATCAGGAAAGTAGCTCGATTTTTGTAAATACTAGGGCGACTTCTGCTCTTCAGTCGTAGAGTTTTGCGAAAATGGCGTCCAGAGCGGCGTTCCCTGCTACCCCGGGCGCCCCGGTGATGAATCCCGGGATGAACTCTCCCGGCCACCCGCGGATGGCAGCGATGAATCCGGCCTACCGAGCAATGCCGAACCCGGCTAACCAGTATCCGCTCTGAATCCGTGCTGGTGATTTTCCGACGGTGGAGTCGGTGTGAAATACacaaactgacttttttttttccactcgcTTCTCTGCAAGTGTTCGCTCCAACTTCCGCATTTAAGAGGATTTAAGGCTGAGTCCCAAAGCGGCTCCGTGCTCCCTacactagtgcactacataacaGTGAACTGACGCGTCCTGCGCCCTTCCTAGTGCCCTACATGTCCAGGAAAGGAGCTGTTTGGAACACGGCCTCGTAATGTGGCACATTGGAGAACAATGCCTTGACTGAATAAGGCACATTAcagcaaaatgattttttaaattattattttaaatgtataaagtgAC
>TU224599
GGAGGCGGTTTGACAAGACACTTCATGGAAAGAAGAGATGACACTCAGAGATCGCGGAGTGCTTTCGAAATCAGGAAAGTAGCTCGATTTTTGTAAATACTAGGGCGACTTCTGCTCTTCAGTCGTAGAGTTTTGCGAAAATGGCGTCCAGAGCGGCGTTCCCTGCTACCCCGGGCGCCCCGGTGATGAATCCCGGGATGAACTCTCCCGGCCACCCGCGGATGGCAGCGATGAATCCGGCCTACCGAGCAATGCCGAACCCGGCTAACCAGTATCCGCTCTGAATCCGTGCTGGTGATTTTCCGACGGTGGAGTCGGTGTGAAATACacaaactgacttttttttttccactcgcTTCTCTGCAAGTGTTCGCTCCAACTTCCGCATTTAAGAGGATTTAAGGCTGAGTCCCAAAGCGGCTCCGTGCTCCCTacactagtgcactacataacaGTGAACTGACGCGTCCTGCGCCCTTCCTAGTGCCCTACATGTCCAGGAAAGGAGCTGTTTGGAACACGGCCTCGTAATGTGGCACATTGGAGAACAATGCCTTGACTGAATAAGGCACATTAcagcaaaatgattttttaaattattattttaaatgtataaagtgAC

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0019905 syntaxin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224598 True 675 lncRNA 0.50 2 2603193 2604096
TU224599 False 622 lncRNA 0.50 2 2603193 2604043

Neighbor

gene id symbol gene type direction distance location
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 13048 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 239908 2361824 ~ 2363285 (-)
samd14 NA coding downstream 257520 2335633 ~ 2345673 (-)
med24 med24,LOC107678252,LOC107660474,LOC107706820 coding downstream 268541 2308241 ~ 2334652 (-)
LOC117598634 NA coding downstream 334138 2245794 ~ 2269055 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding upstream 1937 2606033 ~ 2615766 (-)
slc4a1b LOC108273570,LOC108410807 coding upstream 14293 2618389 ~ 2638273 (-)
LOC113547505 NA coding upstream 128120 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 252140 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 270420 2874516 ~ 2896348 (-)
G189702 NA non-coding downstream 203717 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 322440 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 440622 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 456278 2146712 ~ 2146915 (-)
G189451 NA non-coding downstream 541928 2048830 ~ 2061265 (-)
G189810 NA non-coding upstream 51207 2655303 ~ 2655507 (-)
G189855 NA non-coding upstream 90684 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 188731 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 192411 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 306916 2911012 ~ 2911255 (-)
LOC113547489 NA other downstream 392214 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 733200 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 829673 1760834 ~ 1773520 (-)
G189199 NA other downstream 1032120 1568286 ~ 1571073 (-)
G189180 NA other downstream 1037933 1564890 ~ 1565260 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 181985 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 188950 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 247959 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2307638 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2345067 4949163 ~ 4952859 (-)

Expression


Co-expression Network