G189810


Basic Information

Item Value
gene id G189810
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2655303 ~ 2655507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224700
agcaggagcaggaacagcagcagggGCAGGAGCAGCAGtaggaacagcagcaggagcagcagcagcaggaacagcagcaggagcaggaacagcaggaggaacagcagcaggagcaggaacagcagcagaaggagcaggagcagcagcagcagcaggagcaacagcaggaacagcagcaggagcaacagcaggaacagcagcagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224700 True 205 lncRNA 0.61 1 2655303 2655507

Neighbor

gene id symbol gene type direction distance location
slc4a1b LOC108273570,LOC108410807 coding downstream 17030 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 39537 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 65158 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 292018 2361824 ~ 2363285 (-)
samd14 NA coding downstream 309630 2335633 ~ 2345673 (-)
LOC113547505 NA coding upstream 76709 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 200729 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 219009 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 269088 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 301932 2957439 ~ 2967729 (-)
G189717 NA non-coding downstream 51207 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 255827 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 374550 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 492732 2160630 ~ 2162571 (-)
G189512 NA non-coding downstream 508388 2146712 ~ 2146915 (-)
G189855 NA non-coding upstream 39273 2694780 ~ 2701420 (-)
G189885 NA non-coding upstream 137320 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 141000 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 255505 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 421524 3077031 ~ 3077290 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 45530 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 444324 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 785310 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 881783 1760834 ~ 1773520 (-)
G189199 NA other downstream 1084230 1568286 ~ 1571073 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 130574 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 137539 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 196548 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2256227 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2293656 4949163 ~ 4952859 (-)

Expression


Co-expression Network