G189855


Basic Information

Item Value
gene id G189855
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2694780 ~ 2701420 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224750
ctatagcatgatgctgccaccaccgtgcttcactgtgtgtTCTAGTGCTCTTTGGGTTATaagctatctttttttttgcgaGAAACATAtctttgcccaaaaagttctttGTACAATTTCACCTTCAGATCTTAGGCCACGACCTTGACCTGActtcataagaaaaaaacatcatgacACATGGATATGGTGCTGCAACTCAAATTAGTTTATTTCCTTGTTTCTCGACCATTTTATTCAAGAATTCTAGCAAATTCACATTTATATGATACAGTGTACATAGAAGTAAATACAAGGAACATTCAGAATTTTGTACATTATTTCCCCCCTCAGAACACTTCCAGGATAAATTACCCACAAGCCACCTGGTGTctcctccttcacctccttcGCTTCATCTCCATCATGCTACTCAAATAAGTGCAAGATCGAAAACGATGATTTTTGCCTCTAATCTGTAATACCAAGACCAGTGTGGAATATCTTCAACATCCACAGACAAGCTTTTGTCAGAAAGCAGTGTGAccattttttccataaaaaaaaaaaaaaaaccatatacGACATGCATCTCTGCTCCAagaacaaacagcaaaaaaaaataaaaatagaggaTTAATTACAATGTTGTGACAGAAGTAGCCACGGCCTTACAGAATGATAGGCATCTCTCGATCAACAAGGGGCGGGGCTAAGTACAAATTTAATAAGCCAATCAAATATCTGATCGTACGACATCTCCAATTTGCGATAGCTAGCTTCCATAATGTATAATTACATATTACGCAATTAGCAATACTATAAATACATATTCTTATAAACACAATACATCTTATGCCGTTACCAAGCCTGCTATGAAATAGCTTGTTACTGTCTTTGTATATTATGTTTTGactatacaatataatatttagcataatgttagctagtaaACCAGGTCAAACATTTGTTAATATTAGCAAAGCTCACTAGTTAGCTGGGTTGTGTTGTGCTGGGTTgagtagtgttgcatttaggtagctggctagtttagctaacattactaaattattaaagtgtgtaaataaaaccagtattttatgttttcatggAGATGTTATGTTTTCAATTTAAGCTCTGCCCCTTGTTGACCTAgtagtttctgtttttcatgaaatctgGACATGCGCCGTGTCGCATCATTGAGTAATCGAACTTGAAGTAAATGTGAATTTCcagtaaaatacaaaacaacaaagatattttaacaaaaatacaaacctGATGTTTCTTTCAGGCACTTGTGAGACTcgatatatttatagttttaagTGCTACACCCTaatctggtaaaaaaaaaaaataacaataataataataagtaacaaagaaaataaaagaaaaatctaattACACTTCTTAGTAAGAAAATTAGAAACTCCCTCTTACAAAAAGGGAACACCTTCATTACAAGTGAAACATTtatacagtgtgtttgtgtgtttgtatatattaCAACATCACTGGTCAAGAAAATCTCacttaaaaaagttttttaaaaataaaacgaaATCCTGAAACCCGGCTTCCTTTACTGATAAAAGGAACAATTTGGTGAAAAAAGCGTCAAGCGtcttggccaaaaaaaaatagtctccGGTGTGTGACATTTGCTTCATTATTCCTGCACtggattaaagctaatgtagctaacacaATGGAAGTCTGTTTGACCCAAAATGTTTTAAGCagacttgctgatgtggtttaggacacagtgggACTTCCTGTCATCCGTAAACATCAACTAAAGTTCACTGTGTAGCTTAGCACTGGAATGCTATGAGGGCGGCCATCTTAGACTCAAATCGTTTCTGTcaataaaagagaaatatggCTGTACTGCGTGCAATATTTTTCTTGTGTGTCATAGAGAGTAattatgcaaatgtgtgtgctGTTAAACTGTGTGTTGGAttgaatatgttaatattttatcatcggtagctagcatgctagttaaGCAGCCAACCATAGAGGTTGCTGATTCATAAGCCAGATCGATagataaatacatatattacatatgacaaaacttttttaaaaacctgatATTAATGCAGCAGTCCAAAATGGCGTCATTTAGATACACGTCTTTTTgtgagctagctaacattagcttagGTAAATGATAAGGAAcaaggttatatatatatagtatatattattattattataatattctaGATATTTTTCATGGTTCTCTGAAAGCACACAATAAACATTAAGAATCGGAAGACTCCACTTTCAGTCTCCggaatataataaaacaaaatattgttttatgtaattttacCTTTGTGATACAGAAATAATGGGATTATCTATTGATCTGGTGATTTAGGTAAAGCAATTATATAGAACTCAACGGTGACCATCCACTTTTTCAGCAGCCTTGGTTCCGGAAATTTCCCATTTATTTTCCCATATAGACTCTGCAAATCATTCCACTGAACTGCTTTCCCTTCATCTTTCCTTTCACCTTTAGTCTGTTTCTACCAACTATGCTACTGTAAGTCTAAGACTGGTTTTAGTATATTGTTAGTATCTCAGAGTATTCCTGCTTGGTTTATTATTGTATCTCAGAGTATTCCTGtctgatttattattagtatcTCAGAGTATTCCTGtctgatttattattactatcTCAGAAGATTCCTGTCTGATTTTTTATTAGTATCTCAGAAGATTCCTGTCTGATTTTTTATTAGTATCTCAGATAATTCCTGTCTGATTTACTTTTATTATCTCAGAGTATTCCTGCCTGATTTAGTTTTAGTATCTCAGAGTATTCCTgcctgatttagttttagtgcCTGAGAGTATTCCAGTTGGATTTATAATTGGTATCTCAGACTATTTCAGAGTTATTATTATGCTCCAGGTTCACAAGGCAAACTTTTCAACAAAAATTACAGACAAATCCGACAATGTAAGATGCGCTGATGAATCGACTAACTTCCATttcttgttagctacattaggcTTGTAGTAACACCAAACCCATCTCCATGTTACTGAATCGTTTGTATGTACTTTAAAGGTAAATACGTTCTGTGGAAAGAACCAAGTGACCTTTTAGCACACCAGTGATTTGAAAAGTAAAACCTGAAGAACAGGtgattgaaattaaataaaaaacctaAGGCCAGACCGGTTTATCGCTTCTCCTTTGACTGTCTCCTGAGGATTTACGGCCAGTCGTTCCATGCTGTCAGAATCAAAAGAGAACCGTACACCCTCGACCCCTAACACAGGCCTCCTGTCATCTCCTATTCATCATGAAAAGGGCCGCTTGAGTCTAAACGTCTTTTTAACTTCCCGTTAACTCAATAGCTCCTCTGTCAGAGATGGCACGGAGCCGAGTAACGCTTTACACTGGACAACAAGTGTGACgtttaaaaggtttaaaagtGTCACTAGCATAAAACCTTGAGATAATTCTACGCCTCTGGatatctgtttctctttttcattcagCTCTGTACCTTCATTAGTAACATACGCCGTCATTAACTTGTCAAGAGTCGTTAGGGTTAAAGGAACAGCTTGGACAAAAAGGAAATATACACCAAGCGTAGTTGGGTTTGGTGgcgtgtttttgttgtCTAAATCTACTAAATGTTTAACGGTACTTTcaaatacagtgtttttttgttttgttttttttttaagattttttgcgagcttatattacatttatgttaTAGTCTTGTTAGTCatcttttgtaaatatttggacaaaaaAAGCCTATCTACGTTAAATCTGGTCAAAATCTAGACGTCccattaatatgtttcagcttcGCAATTTTAGttcagcaactttttttttttctgtccatgtttattcttttaataatgtgtcagaaaccacatcagcagTTCTGTCTGAGACACTGAACAACTCCACAAAGCCGACCGGTGTGACGCCGCTGTAGGAGGATTTACACAGTGTGATGACGAGCATCGTAGTTTCCAGTGCAACAAATGAAGAAGCAAACTACACTTCACACACCTAACCTGTCTTAGCTGATCGGCATTTCAATTTCAGATCAGCCTGAACACCTAAGGAAGAACGTGCTGTGATGCTTTGCATGTTGCGTTCTTTGTTGTTTCTGGTTCGTATTAAGGCAGCGGTCACTGTGTGCTGTTTATGTGGTGTCCTATTTCTCTCACTTATTACAGCCTTCATTTAAGTCATTTGATTTTAGTTAACCTGAATTGTTCAGATGGGGCACCGggctgctttgtgtgtgtgtgtgtgtgtgtgtgtgtaagcttgtttttttccagagtgtgtgtttgtcattccTGATCTAGGTCACGACGGTGTGACTGAGTTCTTTTCTCATGGTGATGACCCTGGCCAGGTAACTACTGGGATCAACTTACCTTCCTgttcaagaaaaaaacagtacacTGAGTTTCCCTGCGTTTTAACCGGACCACCATGACACCAACACTTTGTTGTCCGTTCATTCAATTTTTTGTGCTTCACTTCAAACCTAAAAACcaatttgaacaaaaaaaaagccaacaaaatgactaaaaaaatcctgaaaactgaaaatagaTGCTTGTTAGTTATTATCAATGTTTTGGCTAGTAGAAATTATCACTGCAACATGTTGGATTATCATAAAGCTCCTAGCAACAAAgagttaccatggcaacaaaaAAGCTACCATTGGCACAAACAGTTATCATGGCAACAAAAAAGTTAACATAAAGGTTATCATGACAACAAAAAATTACCATAGCAACAAAAAAGTTACTGTGACAACCATAGCAACAAAGAAGAACCACGACAACAATGCTATCCTGACAAAAGGGTTACTATGGTAACAAAgagttaccatggcaacaaaaCATGATTgtgacaacagcaacaaaaacgtATCCTAACAACAAGGTTATCATGGCAACAGGGTTGCTACGGAAACAAAGAGTTTACCATCCCCTCAAAAAGTGAAACGACAGCAAAGGGTTaccatggcaaaaaaaaaacagttataatGGCAAACTAtagttaccatggcaacaaaaaagtgttaccatggcaacaaagtgttggcaaaaaaaaatcgGTTAGCATTAGCGCACATTCTTAGcaaaattcttattttttttctctccttctttcacCACAGCGTCTATAAATCTCTATATCTGAGGCTCGACTTTCTCCTTTGAAGTTCGTCCCAAGCAGTTTGTGGTGCCAGCAGTCTCTCAGCCTCTGGAGCATGGCTTTAGTTATTCGCTTGCGTACTCTTCAACACTGCATATTTATGGCGTATTTTACACAATGTACAACCCTTGttatgttttttggtttttttttactgtaagtGAAGACAGAACAACAGATTCGATTGAACTTTGATTACCTGAAGCGTGTGTACCGGAGGTAAAGATTATAACTGCATTACAGTACAGACAGGATTGGATAGACTGATTCATGTCCTGAAGCTTTGTCTGAGTGGATTCACAAACAGAAGACGAAGCACGGAATCACCCTGCGTTCACACAgcttgttttggtttttcagtcTGATATTATCCAAATCGCCAATCACTCAGCGTTGTAGCACCAGGCTTTTGCTTAACCTTGAAATCCTTTACTGTTAACTAATCACTGAGAGCCATATTTAGAGTTAAGCGTGTGTAGTGAGGATCTAATAGCGAAATTGTGCACTTTGGTAATAGTATCGAGATTGAAAGAAGCTCATCTTAATCCGAAGCTTATCTCGAGGAGCGAAATTGTTTTGATGGATAAAATACACTGTACACGTATGCATCCTTTTTTAGTTTATCCTTTTGACAATGGGCGCGTTTACTTTACAAGAGAACTTACTGAATTATATTTCGATTTCAACTGCGATTTCATCACTTCAACTTGGTATGCTGTGTCTTCATATGTTGTGTGTGCAgtataacaaattaaaatgcaaaataataggatgcgCTGCATCAATTGCTATTTTagagctgctgaataatgaggttggaagccatattgtaaaattaaaccaaattcacagggattaatgtgataattacgaCTAGGCCATTTTG

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU224750 True 6119 lncRNA 0.36 4 2694780 2701420

Neighbor

gene id symbol gene type direction distance location
slc4a1b LOC108273570,LOC108410807 coding downstream 56507 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 79014 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 104635 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 331495 2361824 ~ 2363285 (-)
samd14 NA coding downstream 349107 2335633 ~ 2345673 (-)
LOC113547505 NA coding upstream 30796 2732216 ~ 2745395 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 154816 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 173096 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 223175 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 256019 2957439 ~ 2967729 (-)
G189810 NA non-coding downstream 39273 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 90684 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 295304 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 414027 2280546 ~ 2280753 (-)
G189521 NA non-coding downstream 532209 2160630 ~ 2162571 (-)
G189885 NA non-coding upstream 91407 2792827 ~ 2802964 (-)
G189882 NA non-coding upstream 95087 2796507 ~ 2827807 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 209592 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 375611 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 454491 3155911 ~ 3156150 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 85007 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 483801 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 824787 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 921260 1760834 ~ 1773520 (-)
G189199 NA other downstream 1123707 1568286 ~ 1571073 (-)
LOC113547504 LOC108273577,LOC108273573 other upstream 84661 2786081 ~ 2811391 (-)
LOC117598559 NA other upstream 91626 2793046 ~ 2827752 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 150635 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2210314 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2247743 4949163 ~ 4952859 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G199344 NA non-coding CI01000047 null 343774 ~ 350297 (+)