G189882


Basic Information

Item Value
gene id G189882
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2796507 ~ 2827807 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224779
CCTGTTGCGGTGTCTATATAGATACCCCGTGACGCGCTTCTCATTTAGACAGATGCACAGACATTCTGCAGACACAATAAAAGTGGTCTACAGCCTGATTCACTGTTGATGATGGAGTGTCCACGTCTGCTGTGTCTGGCTGCTCTGCTCTTCATGAGTGGGGCAACAACAGTACAAATTACTACATCAGattcatcaacaacaacagacCCACCAGatacaacaacaacagctcCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCGACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATGTAAGTa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224779 True 370 lncRNA 0.45 6 2796507 2827807

Neighbor

gene id symbol gene type direction distance location
LOC113547505 NA coding downstream 51112 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 158234 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 180741 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 206362 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 433222 2361824 ~ 2363285 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 28429 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 46709 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 96788 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 129632 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 143523 2971330 ~ 2975144 (-)
G189855 NA non-coding downstream 95087 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 141000 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 192411 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 397031 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 515754 2280546 ~ 2280753 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 83205 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 249224 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 328104 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 343076 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 345253 3173060 ~ 3173967 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 186734 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 585528 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 926514 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 1022987 1760834 ~ 1773520 (-)
G189199 NA other downstream 1225434 1568286 ~ 1571073 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 24248 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2083927 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2121356 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2231691 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2656884 5484691 ~ 5490925 (-)

Expression


Co-expression Network