LOC117598559


Basic Information

Item Value
gene id LOC117598559
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2793046 ~ 2827752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224780
CAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCAACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCATATATCGATGCTGAACTACCCAGCCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGGATGTTCCCTTATGCTTATTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCACTTGAATATGTTCCATTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGGACCATTCCTTCTATTCCCTCCCCTCACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTCGTTACCATTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACag
>XM_034309351.1
CACAGACATTCTGCAGACACAATAAAAGTGGTCTACAGCCTGATTCACTGTTGATGATGGAGTGTCCACGTCTGCTGTGTCTGGCTGCTCTGCTCTTCATGAGTGGGGCAACAACAGTACAAATTACTACATCAGattcatcaacaacaacagacCCACCAGatacaacaacaacagctcCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCAACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGATGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGAATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCACTTGAATTTGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGATCGCTCTTTCGTCCTGATGAACTATGGGACCATTCCTTCTATTTACTCCCTTTTCTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATTCCTCTGAGCTGTCTTCATCTAGTAACGCCAATATCCCTGGTTGA

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05310 Asthma
ko05332 Graft-versus-host disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU224780 False 615 TUCP 0.47 4 2793046 2814580
XM_034309351.1 True 779 mRNA 0.46 9 2813366 2827752

Neighbor

gene id symbol gene type direction distance location
LOC113547505 NA coding downstream 47651 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 154773 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 177280 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 202901 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 429761 2361824 ~ 2363285 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 28484 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 46764 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 96843 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 129687 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 143578 2971330 ~ 2975144 (-)
G189855 NA non-coding downstream 91626 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 137539 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 188950 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 393570 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 512293 2280546 ~ 2280753 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 83260 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 249279 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 328159 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 343131 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 345308 3173060 ~ 3173967 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 183273 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 582067 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 923053 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 1019526 1760834 ~ 1773520 (-)
G189199 NA other downstream 1221973 1568286 ~ 1571073 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 24303 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2083982 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2121411 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2231746 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2656939 5484691 ~ 5490925 (-)

Expression


Co-expression Network