G189885


Basic Information

Item Value
gene id G189885
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2792827 ~ 2802964 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224782
CAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGGACCATTCCTTCTATTCCCTCCCCTCACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTCGTCACCGTTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagatacatcaacaacaacagc

Function

GO:

id name namespace
GO:0002376 immune system process biological_process

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU224782 True 239 lncRNA 0.50 3 2792827 2802964

Neighbor

gene id symbol gene type direction distance location
LOC113547505 NA coding downstream 47432 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 154554 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 177061 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 202682 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 429542 2361824 ~ 2363285 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 53272 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 71552 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 121631 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 154475 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 168366 2971330 ~ 2975144 (-)
G189855 NA non-coding downstream 91407 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 137320 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 188731 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 393351 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 512074 2280546 ~ 2280753 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 108048 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 274067 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 352947 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 367919 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 370096 3173060 ~ 3173967 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 183054 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 581848 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 922834 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 1019307 1760834 ~ 1773520 (-)
G189199 NA other downstream 1221754 1568286 ~ 1571073 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 49091 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2108770 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2146199 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2256534 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2681727 5484691 ~ 5490925 (-)

Expression


Co-expression Network