LOC113547504 (LOC108273577,LOC108273573)


Basic Information

Item Value
gene id LOC113547504
gene name LOC108273577,LOC108273573
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2786081 ~ 2811391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224784
gttgctgtgtgtgtgtgtgtgagtgtgtctatgtCTATTATTTGATGGACTTGCTAATGAAGGATAACAAACATTTGTCATGttttctctgtgctctctgCCGTCTCCATGCTGGTAGAtgaataatttgtattttttctctctcagctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGACGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGTGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTCGTCACCATTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATTAACAACAACAGCT
>TU224786
TCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGATCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATCCCTCTGAGCTGTCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATCAACAACAATATTTCCAACAGaTCCATTAACAACAACAGCTCCACCAGGT
>TU224787
CTTTCTTCGTCCCAAATGTCGATGATGAAGTACCCAACCGATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGAATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGG
>XM_034309629.1
CCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTTGATGACGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTAACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGATCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATCCCTCTGAGCTGTCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATCAACAACAATATTTCCAACAGaTCCATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGACGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGTGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTCGTCACCATTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATCCATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGATGAAGTACCCAACCGATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGAATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATCCCTCTGAGCTGTCGTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATCAACAACAATATTTCCAACAGATCCATTAACAACAGCAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCGACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATCTGAGTATGGATGGTTATGTGGCTTTCTTCGTCCCATATATCGATGCTGAACTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTAACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCACTTGAATATGTTCCATTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGCCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCTCTTACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTTGTCACCATTCCAGTAAGCGATTCCTCTGAACTGTCGTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagCTACAACTCCAAGTCCAACAACAACACTAGCACCCTGTCAGATCCTGAACTGTGCTTGGGATGAAGTCTGTAGGCAGATAAATGGAGCGTATGGCTGCGCCTGTGGGTACATTCCAACGCCCAGCCCGAATGCTTATGatgCCACTGAAACCTGTTCAGGCAGTACTGgatcactgtctctgtctcgctGTCAGCTCTTTGAAGCTGGATTTTCTGCAGATGTTCTCCACCTCAATGACCCAAACTGCAAAGGGGTGGTCCAAAATAACAGGCTGGTGTTCAACTTTGACAGTAATGCCAACATGTGTGGCACAACTCTGGAGAATAACGccacacacatcatcttcaaGAACAACGTTGGGACGACTGACGGGATAGGTGTGATCAGTCGCACTGGTGGGCTCAACATTGCCTTTTCCTGTGTGTATCCACTCGTCCAGAGCATCTCCATGCGCACGGCCATCCAAGCCACAGGAAGTGTAATCAGCAAGGATCTGTCTACTGAGGGCTCGTACCAGATCAGCATGATCCCTTATACTGATGATACATTCCTGGTTCCATTCTTTGGCAATGTGACCCTAGAAGTGAACCATCAGATGTATATAGCCGTGCAAGTGGATCGATTTGATAGCTCTCAGATCGCTCTTGTGCTAGACAGCTGCTGGGCCACACCTGTCAACCAGACTGACTATTCCATCCGCTGGGACCTGATCATTAATGAGTGTCCAAACCCCGCTGATGGCACAGTGCAAGTGTTGCAGAACGGCGTCTCCACATCCAGCCACTTCTCATTCAGGATGTTCACATTCACTGGCTTCTCTACCAAGGTCTACCTGCACTGCCAGGTCCATCTCTGTCTGCTGGAGAAAGGCAACTGTGCACTGCCATGCACTGGAGGACATTCCAGAAGACGGAGATCTGTAGATTTCTATGACTCAGCTGGCATTACCATGGcattctgatttgttttttcttgaaCCTTAGTgctgtcatttcatttttatctttgttctatgtttaatcataatcattaagtattgctttaataataaatgcaaatatcaTCAAAATTACACTATTATCCATAAAACTTTGTGATTGTATCCATCTGTACCTTAATACTTCATAATAAAGCTTTCaagcattttattctttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224784 False 657 TUCP 0.45 4 2800076 2805906
TU224786 False 277 lncRNA 0.46 4 2806601 2809919
TU224787 False 354 lncRNA 0.48 2 2798240 2798669
XM_034309629.1 True 3844 mRNA 0.46 30 2786081 2811391

Neighbor

gene id symbol gene type direction distance location
LOC113547505 NA coding downstream 40686 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 147808 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 170315 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 195936 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 422796 2361824 ~ 2363285 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 44845 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 63125 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 113204 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 146048 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 159939 2971330 ~ 2975144 (-)
G189855 NA non-coding downstream 84661 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 130574 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 181985 2603193 ~ 2604096 (-)
G189702 NA non-coding downstream 386605 2394026 ~ 2399476 (-)
G189547 NA non-coding downstream 505328 2280546 ~ 2280753 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 99621 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 265640 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 344520 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 359492 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 361669 3173060 ~ 3173967 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 176308 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 575102 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 916088 1825035 ~ 1869993 (-)
LOC113534879 NA other downstream 1012561 1760834 ~ 1773520 (-)
G189199 NA other downstream 1215008 1568286 ~ 1571073 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other upstream 40664 2852055 ~ 2855493 (-)
trnap-cgg_3 NA other upstream 2100343 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2137772 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2248107 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2673300 5484691 ~ 5490925 (-)

Expression


Co-expression Network