ndufa4 (ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184)


Basic Information

Item Value
gene id ndufa4
gene name ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2852055 ~ 2855493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224811
ACGCATGTTTTTAACAGAGAAattcacatttcattaaaaaaaaaaagccaggaaTCGACCCCAGGCGTTTAGAGAAGCTGATTCGTTGCTCATAAGATTCAGAGAATCGATTCACTGTGAGTCGACTCCGCATTCCCGATTCCCGTGGCAACGTACCGGAGAGAGCACGCGCGCGCATCGCAGTGCTGAAGACATCTTTTAGTGTTAGTATACAGGCGATTTCTGTCTATATTTTTCGCAAAAAATCAGACAGGATGCTAAAACTTGTGGCAAAACAGCTGAGGAGCCACCCGGCTttgatccCTCTGTTTGTATTCATCGGTGGTGGAGCAACCATGTCAATGCTCTATCTCTGCCGCCTGGCCCTTAAGAACCCGGAATGCTCGTGGGATCGCACCAATAACCCTGAACCCTGGAACAAGCTCGGCCCTAACGACCAATacaagCTCTTCACGGTGAACATGGACTACTCCAAGCTGAAGAAGGACAGGCCTGACTTCTAAACCTGTCCCGGATTTATATAAATGGCACAGTATGAAATCCAAGAGCTGATGAGCATTGCCATTTctgagaaaggaaaggaagcaTTCATGATGCTTCCATACACTTTGTACACATTCATACAGAAACACTTGTTTTGTACTTTATaggaattaatttaaaaaagtatttatgaTTCTTAACCAGAAATGGTTCAGTcaggaaatatataaaatatgtatgatTTTTAGAATTGTGGAAAATCACAGAAaagttatattaaaatgaaattgttttcccaaaatgatttcttttcagTTTGTATTAGCCAGGCTTACATACGTCTCTATCTCTTAAATAAcaccagaaataataaaaaaaattgattcagA
>XM_026947900.2
ATTCCCGATTCCCGTGGCAACGTACCGGAGAGAGCACGCGCGCGCATCGCAGTGCTGAAGACATCTTTTAGTGTTAGTATACAGGCGATTTCTGTCTATATTTTTCGCAAAAAATCAGACAGGATGCTAAAACTTGTGGCAAAACAGCTGAGGAGCCACCCGGCTttgatccCTCTGTTTGTATTCATCGGTGGTGGAGCAACCATGTCAATGCTCTATCTCTGCCGCCTGGCCCTTAAGAACCCGGAATGCTCGTGGGATCGCACCAATAACCCTGAACCCTGGAACAAGCTCGGCCCTAACGACCAATacaagCTCTTCACGGTGAACATGGACTACTCCAAGCTGAAGAAGGACAGGCCTGACTTCTAAACCTGTCCCGGATTTATATAAATGGCACAGTATGAAATCCAAGAGCTGATGAGCATTGCCATTTctgagaaaggaaaggaagcaTTCATGATGCTTCCATACACTTTGTACACATTCATACAGAAACACTTGTTTTGTACTTTATaggaattaatttaaaaaagtatttatgaTTCTTAACCAGAAATGGTTCAGTcaggaaatatataaaatatgtatgatTTTTAGAATTGTGGAAAATCACAGAAaagttatattaaaatgaaattgttttcccaaaatgatttcttttcagTTTGTATTAGCCAGGCTTACATACGTCTCTATCTCTTAAATAAcaccagaaataataaaaaaaattgattcagA

Function

symbol description
ndufa4 Involved in positive regulation of cytochrome-c oxidase activity. Located in mitochondrion. Part of mitochondrial respiratory chain complex I and mitochondrial respiratory chain complex IV. Implicated in cytochrome-c oxidase deficiency disease.

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224811 True 872 TUCP 0.40 4 2852055 2855493
XM_026947900.2 False 741 mRNA 0.40 4 2852055 2855362

Neighbor

gene id symbol gene type direction distance location
LOC113547505 NA coding downstream 106660 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 213782 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 236289 2606033 ~ 2615766 (-)
psmc5 psmc5,LOC107745657,LOC107753303,LOC106579096 coding downstream 261910 2583781 ~ 2590145 (-)
LOC113547524 gjd3 coding downstream 488770 2361824 ~ 2363285 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding upstream 743 2856236 ~ 2864989 (-)
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding upstream 19023 2874516 ~ 2896348 (-)
erbb2 erbb2,LOC108273851 coding upstream 69102 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 101946 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 115837 2971330 ~ 2975144 (-)
G189882 NA non-coding downstream 24248 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 49091 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 150635 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 196548 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 247959 2603193 ~ 2604096 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding upstream 55519 2911012 ~ 2911255 (-)
G190076 NA non-coding upstream 221538 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 300418 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 315390 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 317567 3173060 ~ 3173967 (-)
LOC117598559 NA other downstream 24303 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 40664 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 242282 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 641076 2194344 ~ 2210979 (-)
ppp1r16a ppp1r16a other downstream 982062 1825035 ~ 1869993 (-)
trnap-cgg_3 NA other upstream 2056241 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2093670 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2204005 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2629198 5484691 ~ 5490925 (-)
G191430 NA other upstream 2755627 5611120 ~ 5613954 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004549 ndufa4 coding NC_007123.7 CM002896.2 9880493 ~ 9884326 (+)