G189916


Basic Information

Item Value
gene id G189916
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2874155 ~ 2875297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224817
agaaTCACttagggtttggttataaaaaaagaTCCCAAACTTTGAAAATCCCACTGAGCCATTAcacctaataataaaaactggaaagtgaagtgacttgtggccaagtagggtgacccatacttggaatttgtgctctgcatttaacccatccaagtgcacaaacacagaagtgaacacacacacacacagcagtgggcagccttttttgatgcagcacccggggagcagtttgggggttcagtgccttgctcaagggtctcacttcagtcgtggtattgagggtggaagagagcgctggtcattcactccccccacctacaatccctgctggacccaagactcgaacccacaaccttcaggttcaccttcgggttgcaagtccgactctctatccgttaggccatgactgccTCTTTTgcctgatgagaccaaaataatactttttgGAACGAAGTGCTATCCAACCCTTCTGCTCCCTCCCATTACACTGAGAAAACCttccccactgtgaagcatgatggtggtagcatcaGTTTGTGCGGATGCTTTTCATCGGCACGGACTGAGAAGCTGGTTGGGGGATGGAGCAAAATGCAAGGCAACCCTAGAAGAAAACTTAATTCAGTCTGCAAGAGACTTGAGACTGGGGCAGCATTTCACTTTCCAACAGGACAATTACCCCAGGCATACTaccaaagctacactggagtggttcaaaactaagaacctgaatgtgttagaatgtcCCAGTACTCAAACCTATTGAGAATCTGAGGCAAGACTTTGAACACTGTTGTTCATCAGTGGTCTGCATCCAAGctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224817 True 826 lncRNA 0.47 2 2874155 2875297

Neighbor

gene id symbol gene type direction distance location
ngfrb LOC108273578 coding upstream 176908 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 299381 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 358901 2503394 ~ 2515254 (+)
mki67 NA coding upstream 371325 2489809 ~ 2502830 (+)
raraa raraa,rara,LOC108273576,LOC108410801,LOC107660476,LOC107678286,LOC107716487,LOC107745620 coding upstream 387359 2394076 ~ 2486796 (+)
LOC113547481 LOC108273850,LOC107735415 coding downstream 23592 2898889 ~ 2906026 (+)
LOC113547478 LOC108273849,LOC108443156 coding downstream 30857 2906154 ~ 2923348 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 201796 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 218707 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 224907 3100204 ~ 3107200 (+)
LOC113547470 NA non-coding upstream 229971 2641841 ~ 2644184 (+)
G189684 NA non-coding upstream 258400 2614697 ~ 2615755 (+)
G189626 NA non-coding upstream 264658 2591238 ~ 2609497 (+)
G189678 NA non-coding upstream 266077 2605883 ~ 2608078 (+)
G189570 med24,LOC107716488,LOC107706820,LOC107660474,LOC107678252,LOC107560528 non-coding upstream 555848 2317318 ~ 2318307 (+)
G189933 NA non-coding downstream 49917 2925214 ~ 2925571 (+)
G189934 LOC108273851 non-coding downstream 52504 2927801 ~ 2928169 (+)
G189940 NA non-coding downstream 55636 2930933 ~ 2931380 (+)
G189941 NA non-coding downstream 59058 2934355 ~ 2935400 (+)
G189946 NA non-coding downstream 65933 2941230 ~ 2941830 (+)
G189864 NA other upstream 113145 2760693 ~ 2761010 (+)
pyyb NA other upstream 345335 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 921931 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1208342 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1899937 957532 ~ 974218 (+)
LOC113547538 NA other downstream 94828 2970125 ~ 3021609 (+)
G190028 NA other downstream 363147 3238444 ~ 3239216 (+)
G190212 NA other downstream 525970 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 555016 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 822497 3697794 ~ 3723243 (+)

Expression


Co-expression Network