G189941


Basic Information

Item Value
gene id G189941
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2934355 ~ 2935400 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224846
AGACGGTGCAGTTGGTGGCGCAGGGCACGCAGTGTCCGCTCTCGTTGGCGTATTTCCACATGGTGTGTTGCTCCTCCTTCACGCCGCTCGGGCAGCGCTCTACACACGTGTCACCGTCCTGAAAgtgcacacactccacacacttgTTTGCTCCGGGCCGGTGCAGGAGGCGGAGCCATTGATTAGTCGACACTCAGAGTGACAGGAAACGCAAGAGGATCCGTCGATGAACTCTCTGAAggcactacacacacacgcgcgcgcacaagCACACTCTCTTGGTTGGCTGTTCATcagttattaaatgttaatttgtaatatattattaaatcatttgaaaaaatgtatttaaactcACCCATGCTGGATGTTGCATTGCTCCACACACTCCATACCGCGCTGAAATGACTTACACGACACACACTGACTCGGCCCGGGACCCCAGCAGCTTGCATTCGCACACAGTGAGTCACACACATGACCCTCAGCcactgaatcacacacacacacacacaaaatttataATTTGGCCAGACCTTACCATCGAAAGGTTTTTGAAGATCATATAATTATGTGACTACTGTTATACTGATTATTCTGAAGAGGACACTCCATCTGCAAATACTTCTTATTggttctttttaatttttttgttacgcggataaaagttgttttttttttaaaaaataccaagctgggtgtgagtgtgtgtgagagtgtgttacCACAGGTTTTGGGGTCTCGGTTGTTGTTGCTGATTAGGTTGAGCTCCTGATTCGGGTAGAACAGAGCGGCCCACGGCAGAGACGACGTGTAACACAGCTTGGAGTTGTTGTGGACGAGCACGAGGCCGCCGCTAACGCGGCGCAGAGAACGCAGGCCAAGAGACTCGATGTGGAGGGACTGCACTCCCAGAGAAAACACACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224846 True 927 lncRNA 0.49 3 2934355 2935400

Neighbor

gene id symbol gene type direction distance location
LOC113547478 LOC108273849,LOC108443156 coding upstream 11007 2906154 ~ 2923348 (+)
LOC113547481 LOC108273850,LOC107735415 coding upstream 28329 2898889 ~ 2906026 (+)
ngfrb LOC108273578 coding upstream 237108 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 359581 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 419101 2503394 ~ 2515254 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 141693 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 158604 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 164804 3100204 ~ 3107200 (+)
LOC113547522 LOC108274006 coding downstream 183094 3118494 ~ 3126524 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding downstream 194316 3129716 ~ 3136166 (+)
G189940 NA non-coding upstream 2975 2930933 ~ 2931380 (+)
G189934 LOC108273851 non-coding upstream 6186 2927801 ~ 2928169 (+)
G189933 NA non-coding upstream 8784 2925214 ~ 2925571 (+)
G189916 NA non-coding upstream 59058 2874155 ~ 2875297 (+)
LOC113547470 NA non-coding upstream 290171 2641841 ~ 2644184 (+)
G189946 NA non-coding downstream 5830 2941230 ~ 2941830 (+)
G189952 NA non-coding downstream 17190 2952590 ~ 2952855 (+)
G189953 NA non-coding downstream 19650 2955050 ~ 2959154 (+)
G189954 NA non-coding downstream 24451 2959851 ~ 2960052 (+)
G189959 NA non-coding downstream 31563 2966963 ~ 2967611 (+)
G189864 NA other upstream 173345 2760693 ~ 2761010 (+)
pyyb NA other upstream 405535 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 982131 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1268542 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1960137 957532 ~ 974218 (+)
LOC113547538 NA other downstream 34725 2970125 ~ 3021609 (+)
G190028 NA other downstream 303044 3238444 ~ 3239216 (+)
G190212 NA other downstream 465867 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 494913 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 762394 3697794 ~ 3723243 (+)

Expression


Co-expression Network