G189959


Basic Information

Item Value
gene id G189959
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2966963 ~ 2967611 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224867
AGACTGATGTAGCTGTACCTGGGAGACGGAAGCTTACCCGTGAGCGCCATGTAAGGCGGCTGAGCGGACTGGAAGCCGCGCAGTTTGGCGCCGGTGCAGTTGGTGCGCGCGCACTGCTTCACGCAGTCCCGGTACACGGGCTCCTTATCGCCCTGAGAGCCGTGCACGCGACCCGGTGTGCACAGGAGCAGCGCGGTGAACAGCGCGAGACCCAGTGACGTGCAGCAAACCATCATGGTGTCCACACggtgtatatatagatatatatatatatatatatatatatatgtttaaaaaaaaaaaatctacaggcACCGAGAGAGCGATCCGTCCCTGTCACGTCATGGGAGCTGAGATGAACGTTAACGAGCGGAAGTTACGGCGACATGACAGCTCGCGCTGTTATAAACACCTGGGCGTTTGATCTGAGCGTGCACACGCGCAGGTGAATCTGCTGGAAAGTATGCGGAAACGCGGCGCGCGCGGAGAGCTAGCTACAGACAGCGCTGACAGAAACCCGGAAGTAAAACTCtcactgtctcctctctctctctctctctctctctgtctctctctctaaatttATAGTTTTCCGTCCACACTCGTAAAATAACCACCTGAATAAAACAGTGTCCTAAACTCTAATCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224867 True 649 lncRNA 0.52 1 2966963 2967611

Neighbor

gene id symbol gene type direction distance location
LOC113547478 LOC108273849,LOC108443156 coding upstream 43615 2906154 ~ 2923348 (+)
LOC113547481 LOC108273850,LOC107735415 coding upstream 60937 2898889 ~ 2906026 (+)
ngfrb LOC108273578 coding upstream 269716 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 392189 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 451709 2503394 ~ 2515254 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 109482 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 126393 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 132593 3100204 ~ 3107200 (+)
LOC113547522 LOC108274006 coding downstream 150883 3118494 ~ 3126524 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding downstream 162105 3129716 ~ 3136166 (+)
G189954 NA non-coding upstream 6911 2959851 ~ 2960052 (+)
G189953 NA non-coding upstream 7809 2955050 ~ 2959154 (+)
G189952 NA non-coding upstream 14108 2952590 ~ 2952855 (+)
G189946 NA non-coding upstream 25133 2941230 ~ 2941830 (+)
G189941 NA non-coding upstream 31563 2934355 ~ 2935400 (+)
G189960 NA non-coding downstream 1461 2969072 ~ 2970088 (+)
G189970 NA non-coding downstream 25389 2993000 ~ 2995383 (+)
G189978 LOC107739129,LOC107675819,LOC107589765,LOC107719741 non-coding downstream 60519 3028130 ~ 3028361 (+)
G189987 atp2a1l,LOC108274121,LOC108411009,LOC107653256,LOC102797408,LOC103152350,LOC106956261 non-coding downstream 94461 3062072 ~ 3151481 (+)
G190027 NA non-coding downstream 254326 3221937 ~ 3222309 (+)
G189864 NA other upstream 205953 2760693 ~ 2761010 (+)
pyyb NA other upstream 438143 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1014739 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1301150 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1992745 957532 ~ 974218 (+)
LOC113547538 NA other downstream 2514 2970125 ~ 3021609 (+)
G190028 NA other downstream 270833 3238444 ~ 3239216 (+)
G190212 NA other downstream 433656 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 462702 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 730183 3697794 ~ 3723243 (+)

Expression


Co-expression Network