G189960


Basic Information

Item Value
gene id G189960
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2969072 ~ 2970088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224868
CCCGTGTTAATGGAATAATACtgatataattttaattaacgTGAAAAACTGCAGCGCTGGTGCAGTAGGCAAGTAACGATAATCCAGATGATCAGTGAATATAATATATTCCTCAGCAGGAGCTAAGATCAGATCATCAGACATGTTTCAGCCTTTGTTTCAGCCTGGTTCCTAACAAACTCTGAGGGAGAAGATCCTGCAAAACAAGTTTCTCCTGAAGTGCCATCTGACATGGTGCTGAAGACACCACGTTGTAAACTTTTCATCTCAACATAGGTTTCATTTGGTTCTTATCATTCaacaatacattatttaaaatttaatcatattttatggcagatttaataaaaaaaaaattaataaatagaataaaaacagtaaCTAGTAATAGACTTTTATGATTCCACACAGCATTTAGTGGCATTGACAATTGTGGCTACATCGCCCTCTACTGGTCAATGTGCATAATGGCTCtgttcagtgaatcagtgagtcagatgAATCAACTCATCACACCAATAAGAGCTGACTCTTTTCCAAACGGCTCATTGCTAGAGTTTTTCCCCTCAAGTTGTCAGTCTTTACTTATCCATCGCTTTAACTCTCTAGTGAATTGTGTTGTATAGTTATATAACTGTTCAATACATTATATTTTGCATTGCATGTGCTATTTAAACTCTTTAACTGTTTGTAAAAACAGCAAGGCACTGAATAATTAAGCTCACAGATAGCAAATAGTAATCATTCTGATATTAATAGTACTGAATTTAATGTGTCTGCACTGAACTGCACTTAAAGTAGATTTTAAAGAGGATTTCTGTCGATTTGTTCTGATAAATATTCACATCCCCATCACACTGACTCGAAATGGTTCTGCTGCCCCAAACGACTCAGTTACTGATTCGCCGGATTCATTTTGATCAcggttgctgtgtgtgtgattaacagCGTTAAAGAGACATACATATAGATTACTGAAACCTTTTCGATGAAAGTACCATGTCATCATGATTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224868 True 1017 lncRNA 0.36 1 2969072 2970088

Neighbor

gene id symbol gene type direction distance location
LOC113547478 LOC108273849,LOC108443156 coding upstream 45724 2906154 ~ 2923348 (+)
LOC113547481 LOC108273850,LOC107735415 coding upstream 63046 2898889 ~ 2906026 (+)
ngfrb LOC108273578 coding upstream 271825 2656860 ~ 2697247 (+)
mpp2b mpp2,LOC108273574,LOC108410806 coding upstream 394298 2531080 ~ 2574774 (+)
tut1 tut1 coding upstream 453818 2503394 ~ 2515254 (+)
LOC113547477 adprh,LOC108274007,LOC108411014,LOC108411010 coding downstream 107005 3077093 ~ 3082950 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding downstream 123916 3094004 ~ 3099985 (+)
mto1 mto1 coding downstream 130116 3100204 ~ 3107200 (+)
LOC113547522 LOC108274006 coding downstream 148406 3118494 ~ 3126524 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding downstream 159628 3129716 ~ 3136166 (+)
G189959 NA non-coding upstream 1461 2966963 ~ 2967611 (+)
G189954 NA non-coding upstream 9020 2959851 ~ 2960052 (+)
G189953 NA non-coding upstream 9918 2955050 ~ 2959154 (+)
G189952 NA non-coding upstream 16217 2952590 ~ 2952855 (+)
G189946 NA non-coding upstream 27242 2941230 ~ 2941830 (+)
G189970 NA non-coding downstream 22912 2993000 ~ 2995383 (+)
G189978 LOC107739129,LOC107675819,LOC107589765,LOC107719741 non-coding downstream 58042 3028130 ~ 3028361 (+)
G189987 atp2a1l,LOC108274121,LOC108411009,LOC107653256,LOC102797408,LOC103152350,LOC106956261 non-coding downstream 91984 3062072 ~ 3151481 (+)
G190027 NA non-coding downstream 251849 3221937 ~ 3222309 (+)
G190033 NA non-coding downstream 264301 3234389 ~ 3234610 (+)
G189864 NA other upstream 208062 2760693 ~ 2761010 (+)
pyyb NA other upstream 440252 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1016848 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1303259 1567516 ~ 1665813 (+)
LOC113535146 LOC108261429 other upstream 1994854 957532 ~ 974218 (+)
LOC113547538 NA other downstream 37 2970125 ~ 3021609 (+)
G190028 NA other downstream 268356 3238444 ~ 3239216 (+)
G190212 NA other downstream 431179 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 460225 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 727706 3697794 ~ 3723243 (+)

Expression


Co-expression Network