G190028


Basic Information

Item Value
gene id G190028
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3238444 ~ 3239216 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224959
CCTCATCACCgctaatataatgtataaaacataacattcacacaatatgaaaaattaaGGAAGCATAACAGATGTAAAATTCAGATCTTTAATATCAGTGCCTAAAAGGGTTGcttaattcataataataaaaaaaaaaaaataaacaaacaaaaaaatgaaagataaatTACATAATGCACTATGGATGCAGACTCGAGTGAAAAATACGCTGTAATTCCCGCATGCGTCTCCCTCGAACATCACAATCTCTCTTACTGCAAACACAAGAgctgctttctttctgttttaacGAACACTAACGACATAAAAGTctttacactgcaaaaacaagCCGTGTTCAGGtttaaagaaagtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtcacagacaCAGTGAGGTGGAAATGAGCGTCAGTCCAGAGTTAACAAGGAAATTTAATAAGCTAGATGAtgatgtttcagtgtgtgtgtgtgtgtgtgtgtgtgtgaCGGGGGGGTCGGCTGTGTCCTGTTTTTGGTTTCTGAAACCCCTAACCCCTTCTGAGTGCTCAGTCCGGGTGGAACCTCCTTGTAACGGAGCGGCAGatttctcctcctcctgctgtgttgtgttctttgtgtttttactgCACCGACTGCTCATTGGCTGTGCTGCCCGAATCCTGAGGCTTCATCACGTCAGGCAGCTCGGGAGGATTCGAGAACGGATCCACTTGGAGCTGCTCAAATGCAtcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224959 True 743 TUCP 0.42 2 3238444 3239216

Neighbor

gene id symbol gene type direction distance location
pelo pelo,LOC107653258,LOC107674509 coding upstream 62792 3169668 ~ 3175652 (+)
sult1st6 LOC108274122,LOC108274358,LOC108274359,LOC108411008 coding upstream 102278 3129716 ~ 3136166 (+)
LOC113547522 LOC108274006 coding upstream 111920 3118494 ~ 3126524 (+)
mto1 mto1 coding upstream 131244 3100204 ~ 3107200 (+)
LOC113547472 adprh,LOC108274007,LOC108411014,LOC105894051,LOC106579059 coding upstream 138459 3094004 ~ 3099985 (+)
pkmyt1 NA coding downstream 4906 3244122 ~ 3249224 (+)
LOC113547507 NA coding downstream 12486 3251702 ~ 3253802 (+)
LOC113547534 LOC100305049,LOC107084780,LOC108411452,LOC105894045,LOC107567432,LOC107670912,LOC105890759 coding downstream 22318 3261534 ~ 3265222 (+)
LOC113547491 LOC108273563 coding downstream 176988 3416204 ~ 3417931 (+)
prdm9 LOC108274183 coding downstream 427937 3667153 ~ 3680599 (+)
G190033 NA non-coding upstream 3834 3234389 ~ 3234610 (+)
G190027 NA non-coding upstream 16135 3221937 ~ 3222309 (+)
G189987 atp2a1l,LOC108274121,LOC108411009,LOC107653256,LOC102797408,LOC103152350,LOC106956261 non-coding upstream 86963 3062072 ~ 3151481 (+)
G189978 LOC107739129,LOC107675819,LOC107589765,LOC107719741 non-coding upstream 210083 3028130 ~ 3028361 (+)
G189970 NA non-coding upstream 243061 2993000 ~ 2995383 (+)
G190122 NA non-coding downstream 26285 3265501 ~ 3265710 (+)
G190160 NA non-coding downstream 113442 3352658 ~ 3352920 (+)
G190170 NA non-coding downstream 127878 3367094 ~ 3367293 (+)
LOC117598604 NA non-coding downstream 237854 3477070 ~ 3482359 (+)
G190258 NA non-coding downstream 237855 3477071 ~ 3477663 (+)
LOC113547538 NA other upstream 216835 2970125 ~ 3021609 (+)
G189864 NA other upstream 477434 2760693 ~ 2761010 (+)
pyyb NA other upstream 709624 2525056 ~ 2528820 (+)
LOC117598558 NA other upstream 1286220 1937687 ~ 1952224 (+)
LOC117598477 NA other upstream 1572631 1567516 ~ 1665813 (+)
G190212 NA other downstream 162051 3401267 ~ 3405009 (+)
LOC113547484 LOC108273453 other downstream 191097 3430313 ~ 3453426 (+)
lmf1 lmf1,LOC107580192 other downstream 458578 3697794 ~ 3723243 (+)
rasd1 rasd1,LOC107653935,LOC107720458,LOC108412952 other downstream 541945 3781161 ~ 3783609 (+)
p4ha1a p4ha1,LOC108273903,LOC107753313,LOC107560551 other downstream 664131 3903347 ~ 3930443 (+)

Expression


Co-expression Network