G190048 (LOC108273849,LOC108443156,LOC107684759)


Basic Information

Item Value
gene id G190048
gene name LOC108273849,LOC108443156,LOC107684759
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2911012 ~ 2911255 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU224982
CTCGTCGGATCCGGATTTAAAGATGAGCAGGTCAAAAGGAAGGGCAGCCACCATGTCAATAAGAAACCAACCTTTAATGTAGTGGATGGCAATGCGTTTAGGATGTGTTACCACCTCATCGTTATGATTGATGTATGTGGTACGAAAGCTGATCACGATATCCACCATGAACAAAACATCCACGATGGCATCCACAACGTTGAGTGGGTTGCAGGTGTAACCGCAGACATGTTGCTGATTCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224982 True 244 lncRNA 0.45 1 2911012 2911255

Neighbor

gene id symbol gene type direction distance location
pth3r LOC108273556,LOC108443164,LOC103358568,LOC102199980 coding downstream 14664 2874516 ~ 2896348 (-)
rundc3ab rundc3ab,LOC108273494,LOC108443157,LOC107569197,LOC107694077 coding downstream 46023 2856236 ~ 2864989 (-)
LOC113547505 NA coding downstream 165617 2732216 ~ 2745395 (-)
slc4a1b LOC108273570,LOC108410807 coding downstream 272739 2618389 ~ 2638273 (-)
si:dkeyp-118b1.2 si:dkeyp-118b1.2,LOC108273584,LOC103026640,LOC108410802,LOC107684755,LOC107745658,LOC107694074,LOC105909120 coding downstream 295246 2606033 ~ 2615766 (-)
erbb2 erbb2,LOC108273851 coding upstream 13340 2924595 ~ 2952904 (-)
pgap3 pgap3,LOC103358570 coding upstream 46184 2957439 ~ 2967729 (-)
mylpfb mylpfb,LOC108274226,LOC107571443,LOC101482131,LOC107674915,LOC102196412,LOC108443170 coding upstream 60075 2971330 ~ 2975144 (-)
LOC113547471 LOC108274229 coding upstream 68051 2979306 ~ 2982750 (-)
LOC113547497 LOC108274228 coding upstream 74403 2985658 ~ 2989177 (-)
G189882 NA non-coding downstream 83205 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 108048 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 209592 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 255505 2655303 ~ 2655507 (-)
G189717 NA non-coding downstream 306916 2603193 ~ 2604096 (-)
G190076 NA non-coding upstream 165776 3077031 ~ 3077290 (-)
G190094 NA non-coding upstream 244656 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 259628 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 261805 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 262822 3174077 ~ 3175635 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 55519 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 83260 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 99621 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 301239 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 700033 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 2000479 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 2037908 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 2148243 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2573436 5484691 ~ 5490925 (-)
G191430 NA other upstream 2699865 5611120 ~ 5613954 (-)

Expression


Co-expression Network