G190076


Basic Information

Item Value
gene id G190076
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3077031 ~ 3077290 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU225014
CTCTCCATGTTTAGGACTCTTTTCCACCTCTGGTTGAGTTCTTTGTCTTTTCCTCACAGACTTTAAATCAGATGATTAAGTGTTTTAGTCACAGTTTGAAGTCCTGGAGTGATTTCAGGAAGtcagctctctctcacacacacacacacacacccacacacacacacacacacacacacacgcctaccTGCCTTTACATGCTATCATTCTGCAAGTACACAACAAGGAAGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225014 True 233 lncRNA 0.44 2 3077031 3077290

Neighbor

gene id symbol gene type direction distance location
LOC113547488 doc2a,LOC108274005,LOC108411015,LOC102798681 coding downstream 8890 3033048 ~ 3068141 (-)
LOC113547498 LOC108274359,LOC108274358,LOC108274122 coding downstream 56272 3008265 ~ 3020759 (-)
LOC113547499 LOC108274363 coding downstream 78750 2996966 ~ 2998281 (-)
LOC113547497 LOC108274228 coding downstream 87854 2985658 ~ 2989177 (-)
LOC113547471 LOC108274229 coding downstream 94281 2979306 ~ 2982750 (-)
LOC113547508 LOC108274004 coding upstream 29895 3107185 ~ 3118064 (-)
atp2a1l atp2a1l,LOC108274121,LOC108411009,LOC107716472,LOC107653256 coding upstream 59844 3137134 ~ 3151456 (-)
ppp1cab ppp1cab,LOC108274218,LOC108413689,LOC105894037,LOC107556769,LOC107674520 coding upstream 82698 3159988 ~ 3167791 (-)
LOC113547533 paqr4 coding upstream 99614 3176904 ~ 3180468 (-)
cmn NA coding upstream 105780 3183070 ~ 3205679 (-)
G190048 LOC108273849,LOC108443156,LOC107684759 non-coding downstream 165776 2911012 ~ 2911255 (-)
G189882 NA non-coding downstream 249224 2796507 ~ 2827807 (-)
G189885 NA non-coding downstream 274067 2792827 ~ 2802964 (-)
G189855 NA non-coding downstream 375611 2694780 ~ 2701420 (-)
G189810 NA non-coding downstream 421524 2655303 ~ 2655507 (-)
G190094 NA non-coding upstream 78621 3155911 ~ 3156150 (-)
G190097 NA non-coding upstream 93593 3170883 ~ 3171571 (-)
G190099 NA non-coding upstream 95770 3173060 ~ 3173967 (-)
G190100 NA non-coding upstream 96787 3174077 ~ 3175635 (-)
G190188 NA non-coding upstream 272084 3349374 ~ 3349729 (-)
ndufa4 ndua4,ndufa4,LOC108443163,LOC103023526,LOC107745684,LOC107684782,LOC107569184 other downstream 221538 2852055 ~ 2855493 (-)
LOC117598559 NA other downstream 249279 2793046 ~ 2827752 (-)
LOC113547504 LOC108273577,LOC108273573 other downstream 265640 2786081 ~ 2811391 (-)
smarcd2 smarcd2,LOC107569192,LOC107694073,LOC107684754 other downstream 467258 2591237 ~ 2609773 (-)
LOC113547489 NA other downstream 866052 2194344 ~ 2210979 (-)
trnap-cgg_3 NA other upstream 1834444 4911734 ~ 4918977 (-)
G191056 taok2,LOC108273910 other upstream 1871873 4949163 ~ 4952859 (-)
LOC113527048 LOC108274181 other upstream 1982208 5059498 ~ 5063418 (-)
gdpd3b gdpd3 other upstream 2407401 5484691 ~ 5490925 (-)
G191430 NA other upstream 2533830 5611120 ~ 5613954 (-)

Expression


Co-expression Network